PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g16000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 250aa MW: 28534.2 Da PI: 9.333 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.4 | 4e-30 | 1 | 60 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpvkk+v+r+aed ++++ tYeg+Hnh+ Vradi08g16000.1 1 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVKKQVQRCAEDMSILVSTYEGTHNHP 60 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 3.3E-35 | 1 | 61 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-26 | 1 | 62 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.197 | 1 | 62 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.0E-29 | 2 | 62 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-26 | 2 | 60 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MNDGCQWRKY GQKIAKGNPC PRAYYRCTVS PSCPVKKQVQ RCAEDMSILV STYEGTHNHP 60 LPTSATTIAY TTSAAASMLQ SPSLTTQPGL VNSDTVPLLS SNNVLYNLNA LNFTSSYHHG 120 LRNSPTIFLN RHTIASIDAC KPSNYVLRAE PQMLQIKQRK KGIRVYQAFH GFMDYQPLGF 180 TYQILSIQLR HRRVSVFDEG HFLVNEVQRQ CYDSWTERRE QPRVRERDND NEEGSREAQR 240 VRRGLETEM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-22 | 1 | 62 | 14 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g16000.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-104 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506313.1 | 3e-82 | probable WRKY transcription factor 72 | ||||
Refseq | XP_022633693.1 | 2e-84 | probable WRKY transcription factor 61 | ||||
TrEMBL | A0A1S3UJV2 | 7e-81 | A0A1S3UJV2_VIGRR; probable WRKY transcription factor 72 | ||||
TrEMBL | A0A3Q0EPA5 | 6e-83 | A0A3Q0EPA5_VIGRR; probable WRKY transcription factor 61 | ||||
STRING | XP_007153834.1 | 3e-72 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 4e-39 | WRKY DNA-binding protein 61 |