PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g15670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 375aa MW: 41309.4 Da PI: 9.5066 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.1e-19 | 213 | 262 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +kGVr+++ +g+WvAeIr p++ r+r++lg+f+tae+Aa a++ a+ l+ge Vradi08g15670.1 213 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 262 8******9.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.05E-30 | 211 | 271 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.3E-31 | 212 | 270 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-33 | 212 | 275 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-22 | 212 | 270 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.049 | 212 | 269 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-12 | 213 | 262 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-10 | 213 | 224 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-10 | 235 | 251 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MATGSKFLDN AMIGGSHSLT SYNHLHVLRS GANSSITSSQ HLLSCSNSTS MKEEVPLATW 60 ISHIPAKYNG PQDIKNVREK NQSNSIFPAS DTKNSSIPLN LLETLPPLTM APCFDEPVAS 120 LASSSAPPNF PNLTLVLQEP SMVYSSSSSN MKSGEVMSVT SNPTYQVPHF GQNQHQAGSD 180 AHKTNKNLKS FNENWLSSTR TQPMKYGGRG KLFKGVRQRH WGKWVAEIRL PRNRTRVWLG 240 TFDTAEDAAI AYDTAAYILR GEYAQLNFPD LKHVIQANSL NGTTAALVEA KLQAISQGVS 300 SHRKPTDSPA GLSNKHTDEN GKLKSTNDKN STMKEWQFDN TEKSKSIHHE ISDMETVQLN 360 VLKYTPEYPL FMAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 208 | 269 | 1 | 63 | ATERF1 |
3gcc_A | 4e-21 | 208 | 269 | 1 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g15670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014513166.2 | 0.0 | ethylene-responsive transcription factor ERF062 | ||||
Swissprot | Q9SVQ0 | 2e-51 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A1S3V490 | 0.0 | A0A1S3V490_VIGRR; ethylene-responsive transcription factor ERF062 | ||||
STRING | XP_007144182.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10102 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 7e-38 | ERF family protein |