PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g13880.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 440aa    MW: 48444.3 Da    PI: 8.3499
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g13880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-1183109127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++ rtG C++G++C+F+H+p
  Vradi08g13880.1  83 PGEPDCSYYIRTGLCRFGATCRFNHPP 109
                      5789*********************97 PP
2zf-CCCH382.8e-12158181427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C +++rtG+Ck+G++CkF+H++
  Vradi08g13880.1 158 PECTYYLRTGQCKFGNTCKFHHPQ 181
                      79********************97 PP
3zf-CCCH382.7e-12316341126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +++++C+f+++tG Ck+G+ C+F+H+
  Vradi08g13880.1 316 PGQPECQFYMKTGDCKFGAVCRFHHP 341
                      5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-582109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.58782110IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-884109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-587110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-488108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676154182IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5154181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6158182IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-10158181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4160180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436315343IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-6315342IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-9317341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5319344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4321343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEKKKLNVII PNPQPHGIIP RRNSPISQGQ GLVFVAIVCI DDVASVSLTS CCSRVYDVVS  60
DSLWMMNLRS GETMDSGAYP ERPGEPDCSY YIRTGLCRFG ATCRFNHPPN RKLAIATARM  120
IGEFPERIGQ PECQAHQAGI AGRVALNTLG YPLRPNDPEC TYYLRTGQCK FGNTCKFHHP  180
QPSNMMLSLQ DSSVYPTVHS PTTPGQQSYA GGITNWSRAP YIPSPRWQVP SSYAPLILPQ  240
GVVSVPGWSA YGGQVGSIST SDSHQQAMRN GQTYGTSRQG ELANAGSHGA YSQFRSGTVP  300
VGFYALQREN IFPERPGQPE CQFYMKTGDC KFGAVCRFHH PSERLIPAPD CVLSPMGLPL  360
RPFGLAVSIV LERADTRQCP ICYRENLCVS SIHVMAYANL AQVASLTTQW EFSPIISLHR  420
LQLMPRAGIC YDLHQELLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g13880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-175AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640978.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A3Q0FAY20.0A0A3Q0FAY2_VIGRR; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGXP_007143976.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-124zinc finger protein 1