PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g10810.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 491aa    MW: 56387.2 Da    PI: 7.9973
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g10810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS250.75.8e-771184883374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPil 91 
                      + Ll++Ae v  +++e+a+ lL++l  ++s  g +p+qR+a++f +AL +r+ r++ + +   ++++++e++++e+l  ++      ++  P+ 
  Vradi08g10810.1 118 QFLLAAAERVGCQQFERASMLLSHLLWNSSGGGgSPVQRVAFHFSQALLERIKRKTRGKVTLNKCKKNEEREMIEKLILDTNmaitCHNKIPFN 211
                      679*************************9999889*******************9999998899999999998888776654455688889*** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ++ +++  q I+e v+ ++r+H i +di+ G+   aL+qaLa+R  ++   l+iT++g    +  ++leetgerL +fAe+l++pf ++++ ++
  Vradi08g10810.1 212 QVMQFAGVQVIVEHVAFQTRIHLINLDIGFGVECTALMQALAERHeRQVELLKITAIGL---QGMTRLEETGERLVSFAESLNLPFLYKIVFVR 302
                      *********************************************555669********...589***************************** PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      ++++++ e++ ++ +Ea+aV + ++l +++++ vsle+    +++++ +++P++++v e ea+hns+sF++rf+ea+ +y+a fd++++ + ++
  Vradi08g10810.1 303 SITEIKAEQFGIEDNEAVAVYCPYMLRTMVSDFVSLEH----LMRVMGKIRPTIMIVLEVEAKHNSPSFVNRFIEAFFFYAAYFDCIDTCMKQD 392
                      ******************************99999999....**************************************************** PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                       e r+ +E   l++ i+n++a+e  er  r  +   Wr+ + +  + + ++s++   qa+l+ +k++ ++  +ve + ++l++ Wk+ ++ s+S
  Vradi08g10810.1 393 YECRMRLEGI-LSEGIRNIIAMEDGERMVRDVKIDVWRRFFARYRMVETTFSDSSFYQANLVTKKFEcGNFCTVERNGKCLIIRWKGTTIHSIS 485
                      ********99.********************************************************888889999999*************** PP

             GRAS 372 aWr 374
                      aW+
  Vradi08g10810.1 486 AWK 488
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.48290467IPR005202Transcription factor GRAS
PfamPF035142.0E-74118488IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MTEEFNFESV QPPKKSSFQE TKGQKDKQVL PSSLASLELL SIYGSRFNKL GTQNIRRSVE  60
TCFSPQKLST EEIIRLAGAR YLQHSTQWHH DICIPVHPYG MSLEGLSEEE NRGVEHAQFL  120
LAAAERVGCQ QFERASMLLS HLLWNSSGGG GSPVQRVAFH FSQALLERIK RKTRGKVTLN  180
KCKKNEEREM IEKLILDTNM AITCHNKIPF NQVMQFAGVQ VIVEHVAFQT RIHLINLDIG  240
FGVECTALMQ ALAERHERQV ELLKITAIGL QGMTRLEETG ERLVSFAESL NLPFLYKIVF  300
VRSITEIKAE QFGIEDNEAV AVYCPYMLRT MVSDFVSLEH LMRVMGKIRP TIMIVLEVEA  360
KHNSPSFVNR FIEAFFFYAA YFDCIDTCMK QDYECRMRLE GILSEGIRNI IAMEDGERMV  420
RDVKIDVWRR FFARYRMVET TFSDSSFYQA NLVTKKFECG NFCTVERNGK CLIIRWKGTT  480
IHSISAWKFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3112448727378Protein SCARECROW
5b3h_A2e-3112448726377Protein SCARECROW
5b3h_D2e-3112448726377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g10810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511766.10.0DELLA protein RGL1-like
TrEMBLA0A1S3V0A70.0A0A1S3V0A7_VIGRR; DELLA protein RGL1-like
STRINGGLYMA02G01530.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-38RGA-like 1