PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g07130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 189aa    MW: 19891.4 Da    PI: 8.2775
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g07130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.36.9e-3543121583
              TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 
                      +++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+++++a   ++++ s+ +s
  Vradi08g07130.1  43 TRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTIPAAPISSVAPSVPSS 121
                      689**********************************************************999994442222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3045154IPR005333Transcription factor, TCP
PROSITE profilePS5136927.0446100IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTSQVVLHNF PHSETKPSTT ATTDSPPTAS SLAVTKRSSA LVTRSTKDRH TKVNGRGRRV  60
RMPPLCAARI FQLTRELGHR SDGETIEWLL RHAEPSIIAA TGSGTIPAAP ISSVAPSVPS  120
SESSVSVPVV GGQGMFSVAP PSCRLDLSPP PGLDFAATNA YRHMPFTALL LQPSAAEDNQ  180
NDESLGEQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g07130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512961.11e-134transcription factor TCP11
SwissprotQ9SJK74e-41TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A1S3V3N41e-133A0A1S3V3N4_VIGRR; transcription factor TCP11
STRINGXP_007144360.16e-98(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.17e-41TCP family protein