PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g06500.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 453aa    MW: 51023.1 Da    PI: 4.686
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g06500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.7e-34231142102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k++++++d++l+ +isw ++g sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k+++++         weF ++ F+++kk+ll+
  Vradi08g06500.1  23 FLSKTFDLVDDPTLDPIISWASSGFSFVVWDPLEFARVVLPRHFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFFNEAFQRSKKHLLK 107
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r++s
  Vradi08g06500.1 108 NIQRRRS 114
                      ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.59E-3319112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.4E-5319112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.7E-3620112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2923112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MNPTDDNSPK PLEVLQMNPV PPFLSKTFDL VDDPTLDPII SWASSGFSFV VWDPLEFARV  60
VLPRHFKHNN FSSFVRQLNT YGFRKIDTDK WEFFNEAFQR SKKHLLKNIQ RRRSPQSQQV  120
GSYIGIGSPT TEAGRSEVEV EIEKLRKERT ILMEEVVDLQ QEQRRTANRA GEVNQRLQSA  180
EQRQKKMVSF LAKLIQNPAF LARLRQKKEQ REIDSPRVVR KFVKQHQHET GTAETLQEGQ  240
IVRYQPDWTN IGMSSESPKL SPVSIEQSPH YLSQGLAGEM IGGAQDLTVQ IQNIVTDDLA  300
SVHRITSPQE TMIGEGSSED LLFKGKSVMS PSLELPPDYF TSFPEVLTQE KGFQDFSALG  360
AEDIIKLEDI WDSGLNLSGA GSSCGNELWG NPMNYEHVQE FGITSDMSES DIWDIGSGSL  420
GIDKWPGDEP SVGELDDQSG QPKEDRPQNL DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-242011226129Heat shock factor protein 1
5d5v_B7e-242011226129Heat shock factor protein 1
5d5v_D7e-242011226129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201209ARLRQKKEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g06500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511066.10.0heat stress transcription factor A-3
TrEMBLA0A1S3UYB20.0A0A1S3UYB2_VIGRR; heat stress transcription factor A-3
STRINGXP_007145255.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-103heat shock transcription factor A3