PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g02310.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 628aa    MW: 68582.7 Da    PI: 5.9504
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g02310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07275295526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  Vradi08g02310.1 275 PCPDFRK-GACRRGDMCEYAHG 295
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.208.4E-178153IPR020683Ankyrin repeat-containing domain
SMARTSM0024838001039IPR002110Ankyrin repeat
SuperFamilySSF484034.97E-1612139IPR020683Ankyrin repeat-containing domain
CDDcd002043.38E-1415135No hitNo description
PfamPF127962.4E-757126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00675787IPR002110Ankyrin repeat
PROSITE profilePS5029715.77757164IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001692124IPR002110Ankyrin repeat
PROSITE profilePS5008810.7492127IPR002110Ankyrin repeat
SMARTSM003564.0E-6270296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4274297IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5275295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582275297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4303333IPR000571Zinc finger, CCCH-type
SMARTSM0035643305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MNHLTIETED SFASLLELAA NNDVEGFKRM IERDPSCVDE VGLWYSRQKG SRRMVNELRT  60
PLMVAATYGS IDVLDLILSL SGYDINKPCG LDKSTALHCA ASGGAENAVD VVILLLAAGA  120
DPNSVDGNGH RPVDVIVVPP KHETIRNSLE ALLQTDDSIA VCNLRVITAP SNAYSPPLST  180
SPENGSPSAP DFQLKSKLND GFVSSASEKK EYPVDPSLPD IKNSIYSTDE FRMYSFKVRP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGACRRGDMC EYAHGVFECW  300
LHPAQYRTRL CKDGTSCSRR VCFFAHTAEE LRPLYVSTGS AVPSPRSSTS SAMEFAAAMN  360
MLPGSPSSMS VMSPSPFTPP MSPSANGMSH SSVGWPQPNV PALHLPGSNL HSSRLRSSFN  420
ARDIPMDEFD MLPEYDAQQQ QQLLNEFSCL SKQPNAMNRS GRIKTLTPSN LDDLFSSESS  480
SPRFADPALA SAVFSPTHKS AILNQFQQQQ SLLSPVNTNF SSKNVENPLL QAASFGVQTS  540
GRMKHRRSSS FEHGNNSEEP DFSWVQSLVK ESPTEIKENS TATVSSGAAA GSSSEVSNMS  600
TQMDSVDHAV LGAWLEQMQL DLVAQQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g02310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514213.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3V7910.0A0A1S3V791_VIGRR; zinc finger CCCH domain-containing protein 30
STRINGXP_007145619.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]