PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g02070.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 399aa    MW: 45171.2 Da    PI: 9.3054
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g02070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.7e-11144179540
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                      k  rr+++NReAAr+sR+RKka++++Le    +L +
  Vradi08g02070.1 144 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQ 179
                      7789***********************975544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-7135187No hitNo description
SMARTSM003388.0E-9140206IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.243142186IPR004827Basic-leucine zipper domain
PfamPF001706.5E-8144182IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.38E-7144186No hitNo description
CDDcd147086.14E-22144196No hitNo description
PROSITE patternPS000360147162IPR004827Basic-leucine zipper domain
PfamPF141443.6E-30225295IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDRGGSRNYV SKDSGAYDLG ELDQAFFLYL DGQADTSSVQ DQRQRRALAF FHFSFKDSLR  60
QGLIGSQQKH VSGDPYLICR IVSMELPSTQ TSGSKRPGSS ITKPNPHTEP PSAPEPPKAV  120
KREGNRKGAT SSSEQEAPKT PDPKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIKLNQL  180
EQELQRARAQ GILMGGNALL GGEQEAAMFD VEYARWLEEH QRIVCELRGA VQEHLHENEL  240
RLYVDNCLAH YDQVMNLKSI VAKTDVFHLF FGMWKTPAER CFMWIGGFRP SELIKAEEAL  300
SQGLDALNQS LSDTLTSDSL WCPPNMTNYM GQMAVAMNKL STLESFARQA DNLRHQTIHR  360
LQQLLTTRQA ARCLVAISEY FHRLRALSSL WFTRPRQD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g02070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-128AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640798.10.0bZIP transcription factor TGA10 isoform X1
RefseqXP_022640799.10.0bZIP transcription factor TGA10 isoform X1
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A3Q0FDV20.0A0A3Q0FDV2_VIGRR; bZIP transcription factor TGA10 isoform X1
STRINGGLYMA10G11985.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-145bZIP family protein