PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g30030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 199aa MW: 22196.1 Da PI: 7.4212 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 53.5 | 7.9e-17 | 14 | 62 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k 49 lppGfrF+Ptdeelv +yLk kv + +l++ ++i+e++++k++PwdLp + Vradi07g30030.1 14 LPPGFRFQPTDEELVFQYLKCKVFSYPLPA-SIIPEINVCKHDPWDLPgS 62 79****************************.89**************932 PP | |||||||
2 | NAM | 39.4 | 1.8e-12 | 61 | 105 | 87 | 128 |
NAM 87 gkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk++ s+ + vg++ktL+fy+g++pkg++tdWv+heyrl Vradi07g30030.1 61 GSDKRISSSsnaCNGIVGIRKTLIFYEGKSPKGSRTDWVLHEYRL 105 5677777754444556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.559 | 1 | 134 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-35 | 10 | 134 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-13 | 15 | 105 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEKLNFVKNG VSKLPPGFRF QPTDEELVFQ YLKCKVFSYP LPASIIPEIN VCKHDPWDLP 60 GSDKRISSSS NACNGIVGIR KTLIFYEGKS PKGSRTDWVL HEYRLANAET AACNSSHNYV 120 NEIGDWVLCR LSMKKRSIES GVDEKQRVHG GPRLMFDFMM LGKTDSSTSS SCSSSNNIME 180 VSSNVSDHEE TSGSYTYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-27 | 14 | 139 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-27 | 14 | 139 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-27 | 14 | 139 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-27 | 14 | 139 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-27 | 14 | 139 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-27 | 14 | 139 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-27 | 14 | 139 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-27 | 14 | 139 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-27 | 14 | 139 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-27 | 14 | 139 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-27 | 14 | 139 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-27 | 14 | 139 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-27 | 14 | 139 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-27 | 14 | 139 | 17 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g30030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-132 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014508020.1 | 1e-132 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 5e-46 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A1S3UPU8 | 1e-130 | A0A1S3UPU8_VIGRR; NAC domain-containing protein 83 | ||||
STRING | XP_007159989.1 | 1e-127 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-47 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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