PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g28540.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 193aa    MW: 20790.2 Da    PI: 4.1491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g28540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-143441155
              AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Vradi07g28540.1  3 AWGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALAIKG 44
                     6**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.717152IPR001471AP2/ERF domain
SMARTSM003805.2E-28158IPR001471AP2/ERF domain
CDDcd000182.83E-27154No hitNo description
Gene3DG3DSA:3.30.730.109.9E-27153IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17253IPR016177DNA-binding domain
PfamPF008478.3E-9344IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MRAWGKWVSE IREPRKKNRI WLGTFATAEM AARAHDVAAL AIKGNSAILN FPELAGSLPR  60
PDSNSPRDVQ VAAAKAAAME VMDPPTTPSW TLSQSSSSSS LAVSSSSGET STADELGEIV  120
ELPSLGTSLE IPERSEEVVF VEPVDGWLYS EAWCDGIYGE RECGGYFIGD EISMQESESM  180
ILCGFEGSLW QH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-142532173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g28540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-141AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507437.11e-139ethylene-responsive transcription factor TINY
SwissprotQ391278e-49TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A1S3UN581e-138A0A1S3UN58_VIGRR; ethylene-responsive transcription factor TINY
STRINGXP_007160302.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.15e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]