PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g24220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CAMTA
Protein Properties Length: 1001aa    MW: 112159 Da    PI: 8.1121
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g24220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.62.8e-54321473117
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      +e ++rwl++ ei++iL n++k++lt +++ rp+ gs++L+nrk +ryfrkDG+ w+kkk gktvrE+hekLKvg+v+vl+cyYah+e+n++fq
  Vradi07g24220.1  32 QEaSHRWLRPVEICEILRNYKKFKLTPDPPIRPPAGSVFLFNRKALRYFRKDGHRWRKKKGGKTVREAHEKLKVGSVDVLHCYYAHGEDNENFQ 125
                      5559****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylev 117
                      rr++w+L+++le++vlvhy+e 
  Vradi07g24220.1 126 RRSFWMLDQQLEHVVLVHYREI 147
                      *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.79727153IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-7330148IPR005559CG-1 DNA-binding domain
PfamPF038593.0E-4833146IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.1E-5456544IPR013783Immunoglobulin-like fold
SuperFamilySSF812966.3E-15458543IPR014756Immunoglobulin E-set
SuperFamilySSF484034.7E-15642751IPR020683Ankyrin repeat-containing domain
CDDcd002041.74E-12646749No hitNo description
Gene3DG3DSA:1.25.40.201.9E-14651752IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.149657751IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.897690722IPR002110Ankyrin repeat
SuperFamilySSF525402.04E-7857912IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.015861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242862891IPR000048IQ motif, EF-hand binding site
PfamPF006120.0013865882IPR000048IQ motif, EF-hand binding site
SMARTSM000150.85884906IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.858885913IPR000048IQ motif, EF-hand binding site
PfamPF006120.075888906IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1001 aa     Download sequence    Send to blast
MYLTSSLVFF PCLLQHPLNV SWYLIELEEI LQEASHRWLR PVEICEILRN YKKFKLTPDP  60
PIRPPAGSVF LFNRKALRYF RKDGHRWRKK KGGKTVREAH EKLKVGSVDV LHCYYAHGED  120
NENFQRRSFW MLDQQLEHVV LVHYREIKEG CKSGISPFPV VPVTLVGSSQ NSSVLSSTRT  180
NTPISIVQTS FTSSANKVDQ NGHSSEYEDV NSKDGPQSSS HAQPISNSVI HSAPSFTHEV  240
AGFSELVRNP LISTLSSTFP SYSPGTVFSQ RRLVQNSSRN KIYMHDERHQ TEGSVESSEA  300
DFTVHLLNNA KIDAVNRMQD GVIFRDSHMY IQQVEENLLT VGQVQNEDGL DIFYAQLYDR  360
NDHPIVATTK ALVEQKLKDG ESKQAESGEI KKLDSFGRWM DKEIGGDCEN SLMASDSSNY  420
WSTLGAHNED KEVSSLQPIQ LDMDSLGPCL SQEQLFSIHD FSPEWAYTGV RTKVLIVGTF  480
IGSKKPSSET KWGCMFGEIE VSAEALAGNV IQCQTPLHSS GRVPFYVTCS NRLACSEVRE  540
FQFDEHPTKI LGPLGIKISP EVEVRLQIRL LKLVDLGPDN NLLDCSVSGC EKCKLKGIMY  600
SVRGDSGVFK ETFQIDGIDH INPRNVLFQR LMRDKLYEWL IYKVHEGGKG LHVLDAGGQG  660
VIHLAAALGY VWAMAPLVAA GISPNFRDNP GRTGLHWASY FGREETVIAL VKLGAAPGAV  720
EDPTSALPPG QTAADLASSR GHKGIAGYLA EVDLINRLSI LTAKENETGN IATTIATDSA  780
FQSAEDDSSN FTMDEQHYVK ESLAVFRKSA HAAASILAAF RARSFCQRQL AKSGSDISDS  840
VLDIVADSLS KVQNMYHFED YLHFAALKIQ KRYRGWKGRK DFLKIRNRIV KIQARIRGQQ  900
VQKQYKKVVW SVSIVEKAIL RWRRKGAGLR GFQGGQPVGI DEYDFLSDGR RQKSDDVKKA  960
LDRVKSMVRN PDARDQYMRL IMKYQNFKID DSGSTQSRVD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g24220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505991.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A1S3UIY30.0A0A1S3UIY3_VIGRR; calmodulin-binding transcription activator 1 isoform X1
STRINGXP_007154445.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.11e-136ethylene induced calmodulin binding protein