PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g23260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 201aa MW: 22858.8 Da PI: 6.6671 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 22 | 66 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Vradi07g23260.1 22 RGNITSDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 66 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.344 | 1 | 16 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 2 | 28 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.43E-20 | 3 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.397 | 17 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 21 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-15 | 22 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.71E-12 | 26 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-21 | 29 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
LKRCGKSCRL RWLNYLRPDI KRGNITSDEE ELIIRLHNLL GNRWSLIAGR LPGRTDNEIK 60 NYWNTNLGKK VKENIANPKL DSHLVRTKAT KFTKLFFPHP SMLQHPNKSE EEEKVVAELT 120 TKNNGFLSFP DEEKQLSPDM LTDFNVGDIC LSDLLLDSDF TNICNNQQLF SSCSDQTSAS 180 NNLHSFISFL DTTEETPGQS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-20 | 3 | 71 | 40 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g23260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 4e-69 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506712.1 | 1e-145 | transcription factor MYB8 | ||||
TrEMBL | A0A1S3UL12 | 1e-144 | A0A1S3UL12_VIGRR; transcription factor MYB8 | ||||
STRING | XP_007154596.1 | 5e-96 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 3e-43 | MYB family protein |