PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g22800.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 201aa    MW: 22713 Da    PI: 9.3863
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g22800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-1869123256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q   Le+ F+ + +++  +++ LA++l+L++rqV vWFqNrRa+ k
  Vradi07g22800.1  69 RKKLRLSKDQSSMLENSFKLHTTLNPVQKQALADQLNLKTRQVEVWFQNRRARTK 123
                      677889***********************************************98 PP
2HD-ZIP_I/II1087.1e-3569157190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rlsk+q+++LE+sF+ +++L+p +K++la +L+l++rqv+vWFqnrRARtk+kq+E++ e Lk+++++l++en+rL+ke +eLr +
  Vradi07g22800.1  69 RKKLRLSKDQSSMLENSFKLHTTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVEREWLKKQCQNLSDENRRLKKELQELR-A 157
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-1752123IPR009057Homeodomain-like
SuperFamilySSF466895.56E-1854126IPR009057Homeodomain-like
PROSITE profilePS5007116.37465125IPR001356Homeobox domain
SMARTSM003898.4E-1667129IPR001356Homeobox domain
PfamPF000461.3E-1569123IPR001356Homeobox domain
CDDcd000861.09E-1269126No hitNo description
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
SMARTSM003406.5E-16125168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEDAEECITG LCLGLGMGGY VPKKGKQKEN RPLVDLAFEL CPKGEAINLN HDKVESTDSD  60
NSNNNNGCRK KLRLSKDQSS MLENSFKLHT TLNPVQKQAL ADQLNLKTRQ VEVWFQNRRA  120
RTKLKQTEVE REWLKKQCQN LSDENRRLKK ELQELRALKV GPSPLCIQLS KTATLTTCSS  180
CEKLVKLDEG KNNTELKGRN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g22800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311691e-143KT031169.1 Glycine max clone HN_CCL_118 homeodomain/HOMEOBOX transcription factor (Glyma13g00310.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508346.11e-143homeobox-leucine zipper protein HAT3
SwissprotP466655e-47HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3UQL31e-142A0A1S3UQL3_VIGRR; homeobox-leucine zipper protein HAT3
STRINGXP_007154673.16e-98(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-47HD-ZIP family protein