PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g20020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 311aa    MW: 34486.7 Da    PI: 8.0915
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g20020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-087498126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     +kt+ C  f+  G C+ G++C+FaHg
  Vradi07g20020.1 74 FKTRMCAKFRV-GACRNGENCNFAHG 98
                     69*********.*************9 PP
2zf-CCCH291.9e-09134158125
                      --S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                      +k++lC+ ++ + +C+yGd+C+F H
  Vradi07g20020.1 134 QKMKLCKKYYIGDECPYGDKCSFLH 158
                      5999*******55************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.7E-1470106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-871104IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-47399IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.32473100IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-57498IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-7133160IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76133161IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-7134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-8135159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMSPPSFSTD TDAIEVRLQF PMNNDSLEQH SQQDQPPSIK RARIGDNNNS YPMACPPRMI  60
QNPNFNKGTS HIFFKTRMCA KFRVGACRNG ENCNFAHGVE DMRQPPPNWQ ELVGLRNEER  120
LPSGNWDDDQ KIIQKMKLCK KYYIGDECPY GDKCSFLHED PAKFRDDSGR YRESTAINIG  180
TNGSPKAYGD PSNCLESNKV VNTGLNVSRS NCFCVANPEL QFPGGRNEAE TAGAAPVSNK  240
ATIPTLARAT PVPSNDAPPS QRASVPPANE EEQGKKHLLK WKGPKKINRI YGDWLDDLPL  300
GHNLPGRVGI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g20020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508003.10.0zinc finger CCCH domain-containing protein 39 isoform X1
SwissprotQ9LT818e-68C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A1S3UPK10.0A0A1S3UPK1_VIGRR; zinc finger CCCH domain-containing protein 39 isoform X1
STRINGXP_007154979.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-63C3H family protein