PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g18820.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CAMTA
Protein Properties Length: 1110aa    MW: 125061 Da    PI: 5.5601
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g18820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1161.51.5e-50101162108
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      ++ ++rwl++ ei+aiL n++k++++ e++t p+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+ee+++fq
  Vradi07g18820.1  10 VEAQHRWLRPAEICAILSNYKKFRIAPEPATMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEEDESFQ 103
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelek 108
                      rr+ywlLee+l+ 
  Vradi07g18820.1 104 RRTYWLLEERLRY 116
                      ********99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143770.1115134IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-618160IPR005559CG-1 DNA-binding domain
PfamPF038592.0E-4311118IPR005559CG-1 DNA-binding domain
PfamPF018331.9E-5526602IPR002909IPT domain
SuperFamilySSF812964.67E-15526611IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.102.0E-4527600IPR013783Immunoglobulin-like fold
SuperFamilySSF484032.49E-19706822IPR020683Ankyrin repeat-containing domain
CDDcd002045.21E-16708820No hitNo description
Gene3DG3DSA:1.25.40.207.3E-19711826IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.863711832IPR020683Ankyrin repeat-containing domain
PfamPF127963.5E-9733828IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.965761793IPR002110Ankyrin repeat
SMARTSM002480.002761790IPR002110Ankyrin repeat
SMARTSM00248390800829IPR002110Ankyrin repeat
SuperFamilySSF525401.38E-7928983IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.32933955IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407935963IPR000048IQ motif, EF-hand binding site
PfamPF006120.0045935954IPR000048IQ motif, EF-hand binding site
SMARTSM000150.038956978IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.62957981IPR000048IQ motif, EF-hand binding site
PfamPF006129.8E-4959976IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1110 aa     Download sequence    Send to blast
MGIDIKQIIV EAQHRWLRPA EICAILSNYK KFRIAPEPAT MPPSGSLFLF DRKVLRYFRK  60
DGHNWRKKKD GKTVREAHER LKAGSVDVLH CYYAHGEEDE SFQRRTYWLL EERLRYFLGV  120
NFLKHGGTKA NYTCAKENEE SLPCAQQTDK IMLKAEMDTS FSSVLHPNSY QVPSQTMDSS  180
MNSAQVSEYE EAESAFNGHA SSEFYSFLEL QRPVEKIIDQ AADSYSPHPL IRKSITNMSF  240
SIETGTDEQK KLPVIAETNY VSLTQDRKFI DILSGGLTYE SLKPLGFSSW EDILENNGES  300
QHMPFQPLFP EMQPDNMAVN SNFCQGYDIM VPHLTTSIAK LHDNGSLIQA EGSWQGYSVD  360
SLRVSSWPID NVHSSSTCEV SCSNCEHEVN EVDIQKSLQQ SLLHQHKQDK VLMLNDPQEI  420
MLDYLKSDFE ASRTLDGIED PRFTFKRTQL DGSPAEEGLK KLDSFNQWMS KELGDVEESN  480
KPSTSGAYWD TVESESEVGS TTIPSQGHLD TYVLDPSVSN EQLFSIIDYS PSWAFEGSEV  540
KIIISGRFLR SQQEAEQCKW SCMFGEVEVP AVILAKDVLC CHTPQHKAGR VPFYVTCSNR  600
LACSEVREFD FQVNCTQEVN TAGEDRASIF HTLSRRFGEL LSLGHAVPQN SDSISGNEKS  660
QLRSKISSLL RGEDDVWDKL LELTQENEFS TEDLQEQLLQ NLLKDKLHAW LLQKITDDGK  720
GPNVLDEGGQ GVLHFAAALG YDWALEPTLV AGVNVNFRDI NGWTALHWAA FYGRERTVAF  780
LISLGAAPGL LTDPCPEHPS GRTPADLAST NGHKGIAGYL AESSLSAQLT TLDLNKDVGE  840
NSGNKVVQRI QNTGPVNDLD GLSYEQSLKD SLAAVCNATQ AAARIHQVFR MQSFQRKQLK  900
EFGDDKFGIS DERALSLVKK NGKSHKSGSR DEPVHAAAIR IQNKFRGWKG RKDFLMIRQR  960
IVKIQAHVRG HQVRKNCGKI IWTVGILEKV ILRWRRKGSG LRGFKAEANS EVTMIEDVTS  1020
SEDDYDVLKE GRKQTEQRLQ KALARVKSMI QYPEARDQYH RVLNVVTQIQ ENQVNHDSSC  1080
NNSEEIRDFN NLTDLEALLD EDIFMPTAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g18820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508804.10.0calmodulin-binding transcription activator 3
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A1S3USB70.0A0A1S3USB7_VIGRR; calmodulin-binding transcription activator 3
STRINGXP_007159660.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]