PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g18660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 299aa    MW: 33874.4 Da    PI: 4.572
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g18660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-1958111356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  Vradi07g18660.1  58 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 111
                      566899***********************************************9 PP
2HD-ZIP_I/II130.47.1e-4257149193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + ++L++++e+L +e+ke
  Vradi07g18660.1  57 EKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDTLQQDNEALLKEIKE 149
                      69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-1939115IPR009057Homeodomain-like
PROSITE profilePS5007117.32953113IPR001356Homeobox domain
SMARTSM003898.6E-1856117IPR001356Homeobox domain
CDDcd000862.04E-1658114No hitNo description
PfamPF000464.3E-1658111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-2060120IPR009057Homeodomain-like
PRINTSPR000318.1E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000318.1E-693109IPR000047Helix-turn-helix motif
PfamPF021834.7E-18113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKRLGSSDSL GALMTICPPT DEHSPRNNNH VYGREFQSML EGLDDEGCVE EPGHHAEKKR  60
RLSVDQVKAL EKNFEVENKL EPDRKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
VLKANYDSLK LNYDTLQQDN EALLKEIKEL KSRLPLQEES NTESDVSVKE EMITLQDSNP  180
LCQTAIPGSE CFNKSDEVLG AFKDGSSDSD SSAILNEENA NNNHNSPNNA TISSSGVMQS  240
QSFLSSSSPM NCFQFQKQFP TQYVKMEEHN FLSADEACNF FSDEQAPTLQ WYCSEEWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g18660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026040.0AF402604.1 Phaseolus vulgaris homeodomain leucine zipper protein HDZ1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510048.10.0homeobox-leucine zipper protein ATHB-6
SwissprotQ940J14e-81ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A1S3UVC60.0A0A1S3UVC6_VIGRR; homeobox-leucine zipper protein ATHB-6
STRINGXP_007159709.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-78homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]