PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g18130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 256aa MW: 29217.7 Da PI: 9.9971 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 134.9 | 7.1e-42 | 10 | 144 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg 88 +k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt+eWLl+qak +ik+l++ s+ss sec + +ss + Vradi07g18130.1 10 TKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREknsvggakSASSTSEC---EGVSSLD----- 95 79*************************************************************8888844333333444...5555555..... PP TCP 89 kaaksaakskksqksaasalnlak..esrakarararertrekmriknk 135 + s +++++++ ++ ++ +k +r+kar+rarertrekmr++ + Vradi07g18130.1 96 EVVVSGVNEEHEKETPNMKRRTSKvcRKREKARERARERTREKMRTRRV 144 33333333333333333344444434789****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-39 | 10 | 141 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.521 | 11 | 69 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.434 | 121 | 138 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDHTTRKRST KRDRHSKINT ARGLRDRRMR LSLEVAKRFF GLQDMLGFDK ASKTVEWLLN 60 QAKVEIKQLA REKNSVGGAK SASSTSECEG VSSLDEVVVS GVNEEHEKET PNMKRRTSKV 120 CRKREKARER ARERTREKMR TRRVLAADAS NLNRLSSWNP FETVEDSAAT QSQSVNHPSL 180 DAHLPETEEP SSHAKEHLGT VEDIARHEDN SLVIMNKWSP TMIFNSLNNS AILHEHQFAE 240 FQSLGKPWET YNDHI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g18130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014508267.1 | 0.0 | transcription factor DICHOTOMA | ||||
Refseq | XP_022639384.1 | 0.0 | transcription factor DICHOTOMA | ||||
Swissprot | Q8LN68 | 3e-29 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A0A1S3UQK5 | 0.0 | A0A1S3UQK5_VIGRR; transcription factor DICHOTOMA | ||||
STRING | XP_007155147.1 | 1e-156 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-27 | TCP domain protein 12 |