PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g17390.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 565aa    MW: 62290.6 Da    PI: 7.0273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g17390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087477499123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C k+F++   L  H r+H
  Vradi07g17390.1 477 HECPICLKVFPSGQALGGHKRSH 499
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.88E-5835No hitNo description
SMARTSM003550.381133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7851133IPR007087Zinc finger, C2H2
PfamPF139120.00591133IPR007087Zinc finger, C2H2
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SMARTSM003550.08497119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.55497124IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-898119No hitNo description
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF139121.8E-699121IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-8382409No hitNo description
PROSITE profilePS5015710.284387414IPR007087Zinc finger, C2H2
SMARTSM003550.056387409IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-12387411IPR007087Zinc finger, C2H2
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
SMARTSM003550.071477499IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995477499IPR007087Zinc finger, C2H2
PfamPF139122.1E-13477500IPR007087Zinc finger, C2H2
PROSITE patternPS000280479499IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MEGDQIQEFK HACKFCGKCF PCGRSLGGHM RSHITNLSSE EKEKLPTRKL FSSSLNNDGD  60
KDSEAAATNA GYGLRENPKK TWRISDHSSE DALVFDKFCK ECGKAFHSWK ALFGHMKCHS  120
EKERASDSLE DQDSWTNAKV IMDSQSDNEA TAPNKRRRSK RRTRYTVASA AATSSVVSFA  180
NPSSSLSEVE QEQEEVAMSL MMLSRDVSPW SGPHSVAESS DNNSAYFEAR SSVRTNLVAK  240
FDGSTDFTPN TARMIKQSDN KWEVGNSENP NSIRGKSSQR LTTTAATVET IENGFGANKS  300
GVSSKGYEKV NNSELQYGSA LEDSEGERGR SRVNEPESIL SKSAATGNKY NSIKTKLLGS  360
ELKSNKNWVD KASEPESSKN SHKRGKFECT TCNKTFHSYQ ALGGHRASHK KIKGCFASRN  420
ESSENSIETD LSPDPITTEH KLVNNTDREY LGEQQQGGAG FHDEVETVTE SKKSKGHECP  480
ICLKVFPSGQ ALGGHKRSHM TAGSESRNFQ TVVLQEPVAE IRDFLDLNLP AATEEESNSH  540
ADSNRPWWVV QDNHKQEALV GLIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153160NKRRRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g17390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507262.10.0uncharacterized protein LOC106766973
TrEMBLA0A1S3UMN30.0A0A1S3UMN3_VIGRR; uncharacterized protein LOC106766973
STRINGXP_007155253.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-45C2H2-like zinc finger protein