PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g16990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 248aa MW: 27503.5 Da PI: 6.4273 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.2e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G g+W++++ g+ R+ k+c++rw +yl Vradi07g16990.1 16 KGPWTPEEDIMLVSYIQEHGAGNWRSVPTNTGLMRCSKSCRLRWTNYL 63 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.542 | 11 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.59E-23 | 17 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.48E-12 | 18 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 67 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 28 | 68 | 168 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MNMGRPPCCD KIGIKKGPWT PEEDIMLVSY IQEHGAGNWR SVPTNTGLMR CSKSCRLRWT 60 NYLRPGIKRG NFTEHEEKII IHLQALLGNR YSSTLCDALS LHTTPATHAV PETKPSSTSH 120 QPYSHASSSY ASSYENISRL MENWMKTPNS SSHETNSLGD YSFNNMLNIN TPRSSSSEGA 180 HSTTNTTCAQ DHVFDLFTFN SSTNYGPASQ TQVPLTIIEN WLFEDGASQS HEDLISMSLE 240 ESTSGLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-13 | 14 | 93 | 25 | 103 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light) (PubMed:16005291, PubMed:21637967). Promotes guard cell deflation in response to water deficit. Triggers root growth upon osmotic stress (e.g. mannitol containing medium) (PubMed:21637967). {ECO:0000269|PubMed:16005291, ECO:0000269|PubMed:21637967}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g16990.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonic acid (JA) and salicylic acid (SA) (PubMed:16463103). Triggered by auxin (IAA) in roots (PubMed:9839469, PubMed:21637967). Stimulated by light, UV-light and cold (PubMed:9839469). According to PubMed:16005291 and PubMed:23828545, rapidly repressed by abscisic acid (ABA) in an ABI1-dependent manner. But in contrast, according to PubMed:21637967, transiently induced by ABA in seedlings (PubMed:16005291, PubMed:21637967, PubMed:23828545). Rapidly repressed by drought. Activated by white light, but repressed by blue light and darkness (PubMed:16005291). Transiently induced by salt (NaCl) in seedlings. Induced by sucrose (PubMed:21637967). Positively regulated by SCAP1 (PubMed:23453954). {ECO:0000269|PubMed:16005291, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:21637967, ECO:0000269|PubMed:23453954, ECO:0000269|PubMed:23828545, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-129 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014508126.1 | 6e-98 | myb-related protein 306 | ||||
Swissprot | Q8GYP5 | 1e-63 | MYB60_ARATH; Transcription factor MYB60 | ||||
TrEMBL | A0A1S3UPY2 | 1e-96 | A0A1S3UPY2_VIGRR; myb-related protein 306 | ||||
STRING | XP_007138187.1 | 1e-82 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 1e-60 | myb domain protein 60 |
Publications ? help Back to Top | |||
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