PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g15340.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 325aa    MW: 36886.5 Da    PI: 4.4953
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g15340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1982135356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++++q++ Le+ Fe+++++  e++++LAk lgL+ rqV +WFqNrRa++k
  Vradi07g15340.1  82 KKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWK 135
                      56689************************************************9 PP
2HD-ZIP_I/II1284e-4181173193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls++qv++LE+sFeee+kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEkdye L+++y++lk++ e L ke+++L++e+++
  Vradi07g15340.1  81 EKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYELLHESYESLKANYEILLKEKDKLKSEVAH 173
                      69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.17E-1969139IPR009057Homeodomain-like
PROSITE profilePS5007117.6777137IPR001356Homeobox domain
SMARTSM003897.2E-1980141IPR001356Homeobox domain
PfamPF000461.1E-1682135IPR001356Homeobox domain
CDDcd000861.88E-1782138No hitNo description
Gene3DG3DSA:1.10.10.604.3E-2084144IPR009057Homeodomain-like
PRINTSPR000311.3E-5108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5117133IPR000047Helix-turn-helix motif
PfamPF021833.0E-14137178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAAGRAFSDI TAFLRNQTAP PTSQPLDSLF LSSSTAPFLG SRSMMSFEGE GGKGCNGSFF  60
RAFDIDENGD ECMDEYFHQP EKKRRLSANQ VQFLEKSFEE ENKLEPERKT KLAKDLGLQP  120
RQVAIWFQNR RARWKTKQLE KDYELLHESY ESLKANYEIL LKEKDKLKSE VAHLSEKVVA  180
REKEEGQLKQ AESGTKRLQE QDQEPHQRPV LDSVSEGEGS KVSCVVGGCK QEDISSARSD  240
ILDSDSPHYT DGVHSAVLEH GDSSYVFEPD QSDMSQDEED NLSKNLYPSY LFPKLEDADY  300
SDPTESSCNF GFSEEDHGLW NWEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g15340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510539.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A1S3UXD00.0A0A1S3UXD0_VIGRR; homeobox-leucine zipper protein HAT5
STRINGXP_007155341.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-46homeobox 1