PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g15160.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 296aa MW: 32333.4 Da PI: 8.8238

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g15160.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.7e-14	84	128	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I++ k+Rt+ q+ s+ qky Vradi07g15160.1 84 PWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKY 128 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.262	77	133	IPR017930	Myb domain
SuperFamily	SSF46689	3.07E-17	79	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.4E-17	80	131	IPR006447	Myb domain, plants
SMART	SM00717	3.9E-10	81	131	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-11	83	128	IPR009057	Homeodomain-like
Pfam	PF00249	6.0E-12	84	128	IPR001005	SANT/Myb domain
CDD	cd00167	8.13E-10	84	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MSRACPATDS VASGEIMLFG VRVVVDSMRK SVSMNNLSQY EHPHDANNHK DNKDVLAVGY 60 ASAEDAVPHN TGRHRERERK RGVPWTEEEH KLFLVGLQKV GKGDWRGISK NYVKTRTPTQ 120 VASHAQKYFL RRSNLNRRRR RSSLFDITTD TVSAIPMEEE QVQNQDTLFH SQPVCTAVSE 180 TSKSGIPMMP VYQFGIGSGT IVVQGGKPLE ELTLGQGNTE HNVPINLVRA IPVIADPKAS 240 TVSDIITPSS SSAVDPPTLS LGLTFSSDQR QTSSRHSALH AMPCFSNGDS IISVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g15160.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014510415.1	0.0	transcription factor MYB1R1
Swissprot	Q2V9B0	1e-70	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A1S3UWJ2	0.0	A0A1S3UWJ2_VIGRR; transcription factor MYB1R1
STRING	XP_007155372.1	1e-174	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	2e-57	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]