PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g13890.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 379aa    MW: 42044.1 Da    PI: 5.2113
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g13890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.52.4e-15215251135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Vradi07g13890.1 215 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 251
                      *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.2195085IPR010399Tify domain
SMARTSM009791.3E-65085IPR010399Tify domain
PfamPF062002.0E-105384IPR010399Tify domain
PROSITE profilePS510179.286121163IPR010402CCT domain
PfamPF062038.7E-11121152IPR010402CCT domain
PROSITE profilePS501148.893209266IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-12209262IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-12211263No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14213256IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.46E-14214257No hitNo description
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
PfamPF003202.3E-13215251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDTVNNHSQN GEEQPPPPGT ALAMQVVHYS NGSYEGEEAA TPVGHASTAM HARTSELTIS  60
FEGEVYVFPA VTPQKVQAVL LLLGGQETPN TVPTPDFLLQ QNSQDIREIN DPSRCSKLSR  120
RIASLVRFRE KRKERCFEKK IRYTCRKEVA QSNIPLMPVP LFLMAASMVF EVCIGDWMHR  180
KNGQFASLKE DYKSHAENWD SSNAIPGPES TERRCQHCGI SEKSTPAMRR GPAGPRSLCN  240
ACGLMWANKG TLRDLTKAGR IAFEQNELDT SADIKPSKAE AEHSCAKQDK EGSPEETKPV  300
QMDSRRSPEK TNEQFIIGTA ESVTDKLSIQ VENHALSLHE QDTLEDLANA SGTEFEISAG  360
FDEQVDIDDS NMRTYWLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g13890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-78AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510682.10.0GATA transcription factor 24
SwissprotQ8GXL76e-58GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3UXJ00.0A0A1S3UXJ0_VIGRR; GATA transcription factor 24
STRINGXP_007159158.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-50ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]