PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g13770.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 580aa    MW: 65604.9 Da    PI: 7.3257
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g13770.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.93.5e-25959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+i+n s rqvtfskRr+g++KKA+ELS+LCda++a+i+fs t kl++y+s
  Vradi07g13770.1  9 KKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYAS 59
                     68***********************************************86 PP
2K-box35.73.6e-13861551584
            K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      +  +   + L+k++e   +e+R+l GedL+ L+l+eLq++e++L+++l+++ + K++ ++++i++l++k 
  Vradi07g13770.1  86 QIESDSNDILRKKVEDKNHELRQLNGEDLQGLTLQELQKIEENLKRGLTNVLKVKDDKVMQEIRNLKRKC 155
                      4444555679999***9**************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.469161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-28280IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.45E-36377No hitNo description
PfamPF003191.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.96985208IPR002487Transcription factor, K-box
PfamPF014862.6E-1190154IPR002487Transcription factor, K-box
PRINTSPR008911.2E-65178196IPR018203GDP dissociation inhibitor
PfamPF009961.8E-202183575IPR018203GDP dissociation inhibitor
Gene3DG3DSA:3.50.50.601.5E-42184222IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519056.28E-51185526IPR023753FAD/NAD(P)-binding domain
PRINTSPR008921.3E-61188200IPR000806Rab GDI protein
PRINTSPR008911.2E-65196213IPR018203GDP dissociation inhibitor
Gene3DG3DSA:3.30.519.102.1E-58223400No hitNo description
PRINTSPR008911.2E-65241258IPR018203GDP dissociation inhibitor
PRINTSPR008921.3E-61247260IPR000806Rab GDI protein
PRINTSPR008911.2E-65258274IPR018203GDP dissociation inhibitor
PRINTSPR008921.3E-61297312IPR000806Rab GDI protein
PRINTSPR008911.2E-65307322IPR018203GDP dissociation inhibitor
PRINTSPR008921.3E-61354368IPR000806Rab GDI protein
PRINTSPR008911.2E-65384401IPR018203GDP dissociation inhibitor
Gene3DG3DSA:3.50.50.601.5E-42401506IPR023753FAD/NAD(P)-binding domain
PRINTSPR008911.2E-65402423IPR018203GDP dissociation inhibitor
PRINTSPR008921.3E-61452466IPR000806Rab GDI protein
PRINTSPR008921.3E-61495511IPR000806Rab GDI protein
PRINTSPR008921.3E-61520538IPR000806Rab GDI protein
PRINTSPR008921.3E-61553572IPR000806Rab GDI protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0015031Biological Processprotein transport
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0048046Cellular Componentapoplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005093Molecular FunctionRab GDP-dissociation inhibitor activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MTRKRIQIKK IDNISSRQVT FSKRRKGLFK KAQELSTLCD ADIALIVFSA TSKLFDYASS  60
SMQQVIERRD RHSAMHRLDR PSMEQQIESD SNDILRKKVE DKNHELRQLN GEDLQGLTLQ  120
ELQKIEENLK RGLTNVLKVK DDKVMQEIRN LKRKCILCNS LATMFDYVAH TGSGTNGGKP  180
KIETGLKECI LSGLLSVDGL KVLHMDRNDY YGGASTSLNL TQLWKRFRSD DKPPEELGSN  240
REYNVDMIPK FMMANGALVR VLIHTDVTKY LNFKAVDGSF VYNKGKIYKV PATDVEALKS  300
PLMGLFEKRR ARKFFIYVQD YDQNDPKSHE GLDLNQVTAR QLISKYGLED DTIDFIGHAL  360
ALHRDDSYLD EPAKDFVERV KIYAESLARF QGGSPYIYPL YGLGELPQAF ARLSAVYGGT  420
YMLNKPECKV EFDENGKAIG VTSEGETAKC KKVVCDPSYL SDKVHKVGRV SRAICIMSHP  480
IPETNDSHSA QVILPQKQLG RKSDMYLFCC SYAHNVAPKG KFIAFVTTEA ETDQPEVELK  540
PGIDLLGPVD EIFYDMYDRF EPCNDHEADG CFISTVSIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gnd_A1e-16818457412401GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g13770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993381e-170BT099338.1 Soybean clone JCVI-FLGm-13P11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508612.10.0guanosine nucleotide diphosphate dissociation inhibitor At5g09550
SwissprotQ9LXC00.0GDI_ARATH; Guanosine nucleotide diphosphate dissociation inhibitor At5g09550
TrEMBLA0A4D6L6M70.0A0A4D6L6M7_VIGUN; MADS-box transcription factor
STRINGXP_007159145.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-53MIKC_MADS family protein
Publications ? help Back to Top
  1. Lange BM,Ghassemian M
    Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
    Plant Mol. Biol., 2003. 51(6): p. 925-48
    [PMID:12777052]
  2. Holmes-Davis R,Tanaka CK,Vensel WH,Hurkman WJ,McCormick S
    Proteome mapping of mature pollen of Arabidopsis thaliana.
    Proteomics, 2005. 5(18): p. 4864-84
    [PMID:16247729]
  3. Ge W, et al.
    Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen.
    Biochim. Biophys. Acta, 2011. 1814(12): p. 1964-73
    [PMID:21798377]