PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g10760.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 268aa    MW: 28869.7 Da    PI: 9.7417
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g10760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31196253359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeH h+
  Vradi07g10760.1 196 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHSHS 253
                      99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.3E-16146192IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-32183253IPR003657WRKY domain
PROSITE profilePS5081130.354189255IPR003657WRKY domain
SuperFamilySSF1182901.07E-26191254IPR003657WRKY domain
SMARTSM007742.2E-37194254IPR003657WRKY domain
PfamPF031061.2E-26196252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAVELMTGYR TTTFTTKAEE NAVQEAASGL ESVEKLIRIL SQTPQQYNSS NQIAIDCKAP  60
PVFHATPLHQ IPKTDGTLND SSSKTIYFSY PSPATSFISS LTADAHTKQP SSSSPPPPAP  120
GSFHITTLSH VSSAGKPPLS SSSSFKRKCS SENLPSGKCG SSSSRCHCSK KSRKMRLKKV  180
VRVPAISLKM ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERALDDPA  240
MLVVTYEGEH SHSLSAADAT NLILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21182254273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g10760.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-178AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436975.10.0PREDICTED: probable WRKY transcription factor 15
SwissprotO221763e-67WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A0L9TP720.0A0A0L9TP72_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R4R50.0A0A0S3R4R5_PHAAN; Uncharacterized protein
STRINGXP_007155894.11e-164(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.15e-50WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]