PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g05520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 361aa    MW: 41423.4 Da    PI: 5.0679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g05520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.4e-19123176356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe+++++  e++ +LAk+lg++ rqV +WFqNrRa+ k
  Vradi07g05520.1 123 KKRRLTSEQVQFLESNFEMENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 176
                      56689***********************************************98 PP
2HD-ZIP_I/II129.31.6e-41123213292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      kkrrl++eqv++LE++Fe+e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlEkdy +Lk++yd lk++ ++L +e+++L+ee+ 
  Vradi07g05520.1 123 KKRRLTSEQVQFLESNFEMENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKARYDILKRDYDNLVQENDKLKEEVY 213
                      9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-19112180IPR009057Homeodomain-like
PROSITE profilePS5007117.167118178IPR001356Homeobox domain
SMARTSM003892.1E-17120182IPR001356Homeobox domain
CDDcd000863.88E-16121179No hitNo description
PfamPF000463.2E-16123176IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-20125185IPR009057Homeodomain-like
PRINTSPR000311.2E-5149158IPR000047Helix-turn-helix motif
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5158174IPR000047Helix-turn-helix motif
PfamPF021839.9E-15178215IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEDKARSNLR CEGGDASDAG ATMTSRATAA LRVPVRRLRR AMAGEKLNGG SSMTLLLQKE  60
RLPCSPEHIQ TFWVQNSQPS FQGSKSLVNV VNVRDRRPFF RGVEREENDD DEDFEVFPHQ  120
PGKKRRLTSE QVQFLESNFE MENKLEPERK VQLAKELGMQ PRQVAIWFQN RRARFKTKQL  180
EKDYGMLKAR YDILKRDYDN LVQENDKLKE EVYSLMKVIP REKEKQNLDD TSCDAVNSGH  240
KEQKDLIING GSKNESKVAL PVMVISKQKD ANSAKSDVLD SESPHFIDGN QSSLFEPADS  300
SHALEPDHSD FSQDEEDILS QNMPLLPKFE VEYVCYDEPP ENPFTFRFPV EDQTFCFWSC  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170178RRARFKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g05520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507974.10.0homeobox-leucine zipper protein HAT5
RefseqXP_014507975.10.0homeobox-leucine zipper protein HAT5
RefseqXP_022638849.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A1S3UPQ30.0A0A1S3UPQ3_VIGRR; homeobox-leucine zipper protein HAT5
STRINGXP_007153855.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-46homeobox 1