PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g04500.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 314aa    MW: 35384.3 Da    PI: 7.0712
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g04500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-2175135257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      ++R+++t+ ql +Leel+++ +++psae+++++A++l    +++ ++V++WFqN++a+e++
  Vradi07g04500.1  75 STRWSPTPVQLLVLEELYRQgTKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 135
                      68*****************99**************************************97 PP
2Wus_type_Homeobox112.32.6e-3674137265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
    Vradi07g04500.1  74 QSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 137
                        789***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.08E-1369139IPR009057Homeodomain-like
PROSITE profilePS5007112.34171136IPR001356Homeobox domain
SMARTSM003895.9E-773140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-976135IPR009057Homeodomain-like
PfamPF000463.6E-1976135IPR001356Homeobox domain
CDDcd000869.41E-676131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSDSYASTFH SPTPNVTHAT SKLTTLCSIA QPYCICTHCN HILSFNHHVG KPDSISNATE  60
EGTNNTGSHV QSQQSTRWSP TPVQLLVLEE LYRQGTKTPS AEQIQQIASQ LRQFGKIEGK  120
NVFYWFQNHK ARERQKRRRR EMEENNAASS SEGLKETGCG VKETKKWAST SNCSRHAEES  180
AALDIAEKGS NGWTQFEERG IQVLRRNISE RRLQLQDNME IPCFPPTTMA AALATSHRTL  240
TTQLLIPQSY NRETLNYYDG ENADPRTLDL FPHKNDDQDG ICLAERKSMF CASASMDTDI  300
TSSQFFEFLP LRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g04500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506266.10.0WUSCHEL-related homeobox 6
TrEMBLA0A1S3UJQ80.0A0A1S3UJQ8_VIGRR; WUSCHEL-related homeobox 6
STRINGXP_007157754.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151541012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.15e-29WUSCHEL related homeobox 1