PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g01260.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 799aa    MW: 88704.7 Da    PI: 6.8801
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g01260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.2e-085496347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Vradi07g01260.1 54 AWTRQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 96
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-1046101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-54999IPR009057Homeodomain-like
PROSITE profilePS5129313.41650101IPR017884SANT domain
SMARTSM007172.7E-65199IPR001005SANT/Myb domain
CDDcd001677.31E-65497No hitNo description
PfamPF002495.6E-65496IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MEAEAQISRD SNTQFQPEPV VSVQKGDPGV SSSVANAVIP QQPATKKPTR QWAAWTRQEE  60
ESFFTALRQV GKNFEKITSR VQSKNKDQVR HYYYRLVRRM NKLLGPGLCL DAKNSKDTNA  120
AMLRWWSLLE KYSCKASKLH LKPRRFKIFL EALEHQLLKD RKKNVRKRPL QGGNCLPPVP  180
TTVSNQGRAS GNEARAVKLV LVDSQNILKL GPSKSSMKRN INMGVSRSNT KGDSNTMKST  240
RQRKKSGMIS TAAYRKWEKA AIAGVSLVAD AAEHLERAAT VREIEQDQEN PGEKCSDPTD  300
YVLPSLPSCQ QNQFVDNNVN SMKLKLQLFP IDEPTRRALE VDKHNPHLEL TLSTRKKISS  360
ILEHLNRKWG HSSIAVGELM LFPYGVQREN LFNYQRWSQE STLSAADIYA MIGSPPIFRL  420
RYGWFSNSEL GLLNMQVPVA SGSILAQSKS RVYNSKDQIV NSVSCPSAAA NTHSMELSEG  480
CRISMNRNHT LMTSSPGVPN TRGNSAYLNT SSEESRHPTA NTSWHEKDVR DGAVTTQLED  540
LEELKLSSGA GLSAGEWADS LTNISVGDLL SGMSQDLEDN CINPPIAENC HDVQQVPFSS  600
DSFDAAIAAH ISRHQDKMGH SSLAAHMSSI WDAEETCDAF IFRRDHILHA DRPCLSPVAS  660
LESEKKVPER SFEKLDELSP EREGLVDDFV QSDPMPMDSS ESDADIQDHL GKDFGALADI  720
YWPDSLGPLD LDIPSSTKYH TEDLIFSDSL SGLNRLIASS LDAFQNCSFF GFDKKEAPST  780
VEARESATLS DFKIGSGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g01260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014509919.10.0TSL-kinase interacting protein 1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A1S3UVJ10.0A0A1S3UVJ1_VIGRR; TSL-kinase interacting protein 1
STRINGXP_007156135.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1