PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g16730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARF | ||||||||
Protein Properties | Length: 930aa MW: 102875 Da PI: 5.4383 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 6.2e-24 | 159 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F +++ Vradi06g16730.1 159 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyTIQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDE 249 99*********************999*****9555555.49************************************************..457 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+v+v+r Vradi06g16730.1 250 KSQLRVGVRRV 260 7778****985 PP | |||||||
2 | Auxin_resp | 113.4 | 2.2e-37 | 285 | 368 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv++++k++k++ ++vsvGmRf m+fete+s +rr++Gt+vg+sd+dp+rWp+S+Wr+++ Vradi06g16730.1 285 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVLgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPDSRWRNIQ 368 79********************************988********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-47 | 147 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-41 | 152 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.82E-23 | 158 | 259 | No hit | No description |
Pfam | PF02362 | 2.5E-21 | 159 | 260 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.5E-25 | 159 | 261 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.872 | 159 | 261 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-32 | 285 | 368 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.7E-10 | 820 | 908 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.628 | 822 | 906 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.51E-8 | 824 | 901 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 930 aa Download sequence Send to blast |
MMASVEEKLK TGGVGVGVGV GAGGGMVVGS QTLVAEMKLL KEMQEHSGVR KTLNSELWHA 60 CAGPLVSLPQ VGSLVFYFPQ GHSEQVAAST RRTATSQIPN YPNLPSQLLC QVQNVTLHAD 120 KETDEIYAQM SLQPLNSEKE AFPISDFGLK PSKHPTEFFC KTLTASDTST HGGFSVPRRA 180 AEKLFPPLDY TIQPPTQELV VRDLHDNTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG 240 DSVLFIRDEK SQLRVGVRRV NRQQTTLPSS VLSADSMHIG VLAAAAHAAA NRSPFTIFYN 300 PRACPSEFVI PLAKYRKSVL GTQVSVGMRF GMMFETEESG KRRYMGTIVG ISDVDPLRWP 360 DSRWRNIQVE WDEPGCGDKQ NRVSVWEIET PESLFIFPSL TSKNEWGTLL RRPFMRVPEN 420 GTMELPNSMP NLYSEHLMKM LFKPQIINNN GALLSAMQQE SAAARGPLQE MKTTLAPDSM 480 PLRNLHTQSI PDQPIPLNMQ SLLKSDQPEK LHTLAKIELP SGIVTDKPKL EPEVLPPDHM 540 LDYASTSMEG CNIEKVATNP VNQQGLANQL TFHNQNQTPL TQSSPWPMQA QIESSMPHPQ 600 MIDMAQAETA MVNSLLPQLD IDEWMAYASS QPFAAPNRPT GPLPELQEHT SLQPQVVNPP 660 LPNHEVWDHY VKSLKFLSQT DQLASICQPG TFNGINGMPS PNSLRDLSAE SNNQSEICVN 720 VDVSNSVGTT VVDPSTSSTI LDEFCTMKER EFQNPNDCMM GNLSSSQDVQ SQITSASLAE 780 SHAFSLRDIP DNSGGTSSSH VDFDENSFLQ NNSWQQVPAP IRTYTKVQKA GSVGRSIDVT 840 TFKNYEELIR AIECMFGLDG LLNDTKGSGW KLVYVDYESD VLLVGDDPWE EFVGCVRCIR 900 ILSPTEVQQM SEEGMKLLNS GALQGMNVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 393 | 1 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g16730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505290.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A1S3UGY5 | 0.0 | A0A1S3UGY5_VIGRR; Auxin response factor | ||||
STRING | XP_007160683.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8991 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |