PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g15040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 277aa    MW: 31091.1 Da    PI: 6.4179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g15040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.21.2e-2691431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                      lppG+rF P++e l+ +yL+kk e+++  ++ ++ ike+++y+++P +Lp +      +++++k+w+ ++ ++ k+     ++r++ksg+W  +
  Vradi06g15040.1   9 LPPGCRFYPSEEVLLGYYLTKKNENREqrFNGFDLIKELNLYDHDPFELPdAacfpyGYRGRKKHWFCYTVKEPKS-----PSRKVKSGFWLRK 97 
                      79********************9998855666788**************953777765556777888888887765.....689999******* PP

              NAM  87 gkdkevlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      gk +++ ++   ++++ g++  +vfy g + +k+++tdW++ ey+l
  Vradi06g15040.1  98 GKVRDIRDNggiGNAVLGTRSRFVFYAGnSLKKATRTDWILYEYAL 143
                      ********98888888**********984668899*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-316159IPR003441NAC domain
PROSITE profilePS5100534.0369159IPR003441NAC domain
PfamPF023651.7E-1510143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEDRAQDALP PGCRFYPSEE VLLGYYLTKK NENREQRFNG FDLIKELNLY DHDPFELPDA  60
ACFPYGYRGR KKHWFCYTVK EPKSPSRKVK SGFWLRKGKV RDIRDNGGIG NAVLGTRSRF  120
VFYAGNSLKK ATRTDWILYE YALVDQILAS FVLCRVVNKP HHKNSPSEIG RSCCAEESAA  180
VVVRHIGVQH DGCVGGDDVC DDGFVNREIE AAENPIRRGG EHDHAATVSV AQGSQPVQER  240
LSGLPCDGAL FNEAVIPQQH MLSILEEDFI ELNDIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-19515913165NO APICAL MERISTEM PROTEIN
1ut4_B8e-19515913165NO APICAL MERISTEM PROTEIN
1ut7_A8e-19515913165NO APICAL MERISTEM PROTEIN
1ut7_B8e-19515913165NO APICAL MERISTEM PROTEIN
4dul_A8e-19515913165NAC domain-containing protein 19
4dul_B8e-19515913165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g15040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503993.10.0NAC domain-containing protein 71
TrEMBLA0A1S3UD910.0A0A1S3UD91_VIGRR; NAC domain-containing protein 71
STRINGXP_007160867.11e-174(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.13e-24NAC domain containing protein 11