PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G32510.1
Common NameANAC011, F5D14.30, NAC011
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 283aa    MW: 32871.8 Da    PI: 5.1094
Description NAC domain containing protein 11
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G32510.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.7e-5061401128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lppGfrF Ptdeelv +yL+++ eg ++el e+i+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r nratksgyWkatgkd++++++ 
  AT1G32510.1   6 LPPGFRFYPTDEELVGYYLHRRNEGLEIEL-EIIPLMDLYKFDPWELPeKsFLPNRDMEWFFFCHRDRKYQNGSRINRATKSGYWKATGKDRKIVCHs 102
                  79****************************.99**************95334556888*************************************986 PP

          NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ +g++ktLvfy grap g +t+Wvmheyrl
  AT1G32510.1 103 sssssSSSITGCRKTLVFYMGRAPFGGRTEWVMHEYRL 140
                  666555555***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-574164IPR003441NAC domain
PROSITE profilePS5100555.3186164IPR003441NAC domain
PfamPF023651.8E-277140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVGSFLPPGF RFYPTDEELV GYYLHRRNEG LEIELEIIPL MDLYKFDPWE LPEKSFLPNR  60
DMEWFFFCHR DRKYQNGSRI NRATKSGYWK ATGKDRKIVC HSSSSSSSSS ITGCRKTLVF  120
YMGRAPFGGR TEWVMHEYRL FDNDTSQGSL NFKGDFALCR VIKRNEHTLK KCEIISPEVS  180
DESLSNNVNN FCQASDLEKG SCDASNTRLS SPDFILESSF QGNSHSKTEE DSGFQVFTLP  240
EFEYPLEVFA DLNFDLEMED PFMFDYHPEP HMNNEVMSHH IRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-51617017171NO APICAL MERISTEM PROTEIN
1ut4_B8e-51617017171NO APICAL MERISTEM PROTEIN
1ut7_A8e-51617017171NO APICAL MERISTEM PROTEIN
1ut7_B8e-51617017171NO APICAL MERISTEM PROTEIN
3swm_A8e-51617020174NAC domain-containing protein 19
3swm_B8e-51617020174NAC domain-containing protein 19
3swm_C8e-51617020174NAC domain-containing protein 19
3swm_D8e-51617020174NAC domain-containing protein 19
3swp_A8e-51617020174NAC domain-containing protein 19
3swp_B8e-51617020174NAC domain-containing protein 19
3swp_C8e-51617020174NAC domain-containing protein 19
3swp_D8e-51617020174NAC domain-containing protein 19
4dul_A8e-51617017171NAC domain-containing protein 19
4dul_B8e-51617017171NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT1G32510
AtGenExpressAT1G32510
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosettes leaves, cauline leaves and stems. {ECO:0000269|PubMed:24285786}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00175DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G32510.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G32510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-170CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D141e-170AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174529.20.0NAC domain containing protein 11
SwissprotO496978e-86NAC71_ARATH; NAC domain-containing protein 71
SwissprotQ9LS242e-85NAC96_ARATH; NAC domain-containing protein 96
TrEMBLA0A178WL270.0A0A178WL27_ARATH; NAC011
TrEMBLQ9LQK50.0Q9LQK5_ARATH; F5D14.30 protein
STRINGAT1G32510.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150291719
Representative plantOGRP1715800
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]
  3. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  6. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]