PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g15000.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 124aa    MW: 13914.6 Da    PI: 6.9723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g15000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59.3e-152441055
              AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +k+g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Vradi06g15000.1  2 RKWGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 44
                     46**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-25153IPR001471AP2/ERF domain
SMARTSM003801.1E-28158IPR001471AP2/ERF domain
PROSITE profilePS5103219.124152IPR001471AP2/ERF domain
CDDcd000187.06E-24154No hitNo description
PfamPF008472.5E-8244IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-18253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYTTPVA AARAYDTAVF YLRGPSARLN FPELLFQDEV  60
DGANDDDSVN MSADSIRRKA TQVGARVDAL QTALHHHAPS HNPTQISLKP DLNEFPKLED  120
LQD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g15000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503733.14e-88ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC301e-44RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A1S3UCI39e-87A0A1S3UCI3_VIGRR; ethylene-responsive transcription factor RAP2-1
STRINGXP_007160870.12e-85(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.15e-47related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]