PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g14710.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 360aa    MW: 40344.5 Da    PI: 4.5739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g14710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-102833231055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Vradi06g14710.1 283 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 323
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-14273337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-12278332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-11279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-11282327No hitNo description
PfamPF000108.8E-8283323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEPVGAFPEG EWDCFRRMFG IEDHEHDFTQ EFPLLLAGGD ELNILTQQAN FCAAPEAVEN  60
ELMLYSLDAH NNSNTSQYIS QESSYSNSSN CSGDDTVFIA NPGSSNYYFS YPDHMLADNA  120
CVYSLDEKHF APFAPSLANI ATEESVKLYE DFASDRLENF ECNQMEPVVF PSKRRLDVPA  180
EDKINNRSEN HKKKARVLKD VQGCMKNNNT WSKKNQKHDS NREDAEENNA GSDGQSSSSN  240
ISEEDNKENI GGATSESKSV LNSNGKTRAS RGSATDPQSL YARKRRERIN ERLRILQNLV  300
PNGTKVDIST MLEEAVNYVK FLQLQIKLLS SDDLWMYAPL AYNGLDIGIN LNMKNSLPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g14710.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503403.10.0transcription factor bHLH84
SwissprotQ84WK06e-53BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A1S3UBJ30.0A0A1S3UBJ3_VIGRR; transcription factor bHLH84
STRINGXP_007160904.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]