PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g14430.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRF
Protein Properties Length: 438aa    MW: 47825.5 Da    PI: 8.2304
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g14430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC39.59.7e-13204229227
              WRC   2 aepgrCrRtDGKkWRCsrrvlegkkl 27 
                      +  +rCrRtDGKkWRCsr+++ ++k+
  Vradi06g14430.1 204 PNTWRCRRTDGKKWRCSRDAVVDQKM 229
                      678********************996 PP
2QLQ62.98.4e-22151187137
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      ++FT++Q+++L++Q+l+yKy+ an+PvP +Ll +i+k
  Vradi06g14430.1 151 GPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRK 187
                      59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-12151187IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.473152187IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.8E-16152186IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166713.57203247IPR014977WRC domain
PfamPF088796.1E-10204229IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDLGVVGLEG LVGSDSSCAF GSSLASDPET KHKWYGSGVL KQERSGTASE DEWRTPKVPK  60
TDDNMSAASK AMLFHQRNSL LRSNVTLFSE GHNQPQMLSF SSPKSEPLMV DKASLNATLP  120
FSYHQLSSYS RNTGYSSGSI SMHGALAGVR GPFTPSQWME LEHQALIYKY ITANVPVPTH  180
LLIPIRKALD SAAFCNFSTG LLRPNTWRCR RTDGKKWRCS RDAVVDQKMF MSSKENSNNA  240
SERMQDGPAL PMVPPTLELK PKDPFMIHKH QLPYDESSSR NNNEFGLVTS DSLLNPSQKR  300
SFDFMSFTTS SPSNEKLTLS PLRLSRELDP IQMGLGVGSG AHNESNTRQA NWIPITWESS  360
MGGPLGEVLN LSSTNNNSNG SDHCGKNTSA LNLMKDGWDN SPPLGSSPNG VLQKTAFGSL  420
SNSSAGSSPR AENNNIKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g14430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504888.11e-157growth-regulating factor 2
TrEMBLA0A1S3UFT21e-156A0A1S3UFT2_VIGRR; growth-regulating factor 2
STRINGXP_007160951.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-53growth-regulating factor 2