PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g14150.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 321aa    MW: 36040.8 Da    PI: 6.5083
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g14150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-092623001854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Vradi06g14150.1 262 MFQNflHPYPKDAEKHSLAVKSGLTRSQVSNWFINARVR 300
                      5887779******************************88 PP
2BELL39.71.2e-131572012570
             BELL  25 qyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                      q+ ++++tv+s+F+a+++l++ ++++++Al++iS  ++ L+++i++
  Vradi06g14150.1 157 QCLDEVHTVASAFHAATELDP-HMHAHFALQTISLLYKDLRERISN 201
                      99*******************.**********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.007888201IPR006563POX domain
PfamPF075268.7E-9156200IPR006563POX domain
PROSITE profilePS5007111.321241304IPR001356Homeobox domain
CDDcd000862.67E-11244305No hitNo description
SMARTSM003892.0E-6244308IPR001356Homeobox domain
SuperFamilySSF466891.92E-15246312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-26247309IPR009057Homeodomain-like
PfamPF059209.4E-16261300IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MENNMYSASL DIPGRNSAVI EEIAQHLAPK PLIQCYSFDL NNQNHIINGI PVLAAEQGEP  60
RSDVHVDGCF INQARIADSN SFVSIQGKSI VGDASNPINN SAIQEHLAGG RPIASDASLA  120
DRIGLQENLQ SSAALPHSMS SLEALGPYIF SNWQDTQCLD EVHTVASAFH AATELDPHMH  180
AHFALQTISL LYKDLRERIS NCIRAMGPDF NSLCSEEEKE WSLETSFIQK QWALQQLKKK  240
DQLWRPQRGL PERSVSVLRA WMFQNFLHPY PKDAEKHSLA VKSGLTRSQV SNWFINARVR  300
LWKPMIEEMR RYVILKDVLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15250311566Homeobox protein Meis2
3k2a_B2e-15250311566Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g14150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503926.11e-108homeobox protein ATH1
RefseqXP_017428422.11e-108PREDICTED: homeobox protein ATH1-like
RefseqXP_017428423.11e-108PREDICTED: homeobox protein ATH1-like
RefseqXP_017428424.11e-108PREDICTED: homeobox protein ATH1-like
RefseqXP_017428425.11e-108PREDICTED: homeobox protein ATH1-like
RefseqXP_017428426.11e-108PREDICTED: homeobox protein ATH1-like
RefseqXP_022638224.11e-108homeobox protein ATH1
RefseqXP_022638225.11e-108homeobox protein ATH1
TrEMBLA0A0S3RPM41e-107A0A0S3RPM4_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UD301e-107A0A1S3UD30_VIGRR; homeobox protein ATH1
STRINGXP_007160994.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.15e-64homeobox gene 1