PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g11690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 222aa MW: 24974.7 Da PI: 8.2965 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 52 | 96 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ +T+eE+e+l+ a + +G + W+tIa+ + gRt++ +k++w+ + Vradi06g11690.1 52 RNCFTKEEEERLIAAREIYGAK-WATIAKLFE-GRTDNALKNHWHVL 96 688*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.866 | 11 | 43 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.1 | 15 | 48 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-8 | 19 | 53 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.78E-20 | 36 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.091 | 47 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-13 | 51 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-12 | 52 | 95 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-18 | 54 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.59E-11 | 55 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MENSPSAAEN MPNYRVNHWR QDEDQKLTQL VQEHGKSCRL RWRNHLDPGV NRNCFTKEEE 60 ERLIAAREIY GAKWATIAKL FEGRTDNALK NHWHVLIARK RKEANNGSLQ DLTNRSTSSS 120 SHHHTLFHHM MNFNATQRAL APLSPLNFGS VPSFSDSFPF GLLNPAASSA GIMKKGLFHS 180 SSSPFTEFNK ASSSSDRKEP HDAGFKDVTF YDFLGVGADD E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-21 | 11 | 100 | 2 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g11690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-134 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014503316.1 | 1e-149 | transcription factor MYB52-like | ||||
TrEMBL | A0A1S3UBB7 | 1e-147 | A0A1S3UBB7_VIGRR; transcription factor MYB52-like | ||||
STRING | XP_007161388.1 | 1e-99 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20205 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.1 | 2e-26 | myb domain protein 110 |