PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G29020.1 | ||||||||
Common Name | AtMYB110, MYB110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 27613.5 Da PI: 10.2838 | ||||||||
Description | myb domain protein 110 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 65 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed +l ++v +G+ +W+ Ia+ m+ gRt+k+c++rw++ AT3G29020.1 65 RGHWRISEDTQLMELVSVYGPQNWNHIAESMQ-GRTGKSCRLRWFNQ 110 789999**************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 118 | 161 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ + AT3G29020.1 118 RAFSDEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 161 689******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.138 | 60 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-10 | 64 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-15 | 65 | 110 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.15E-27 | 65 | 158 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 66 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-9 | 68 | 109 | No hit | No description |
PROSITE profile | PS51294 | 25.414 | 112 | 166 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 116 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-13 | 118 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.69E-9 | 119 | 162 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 119 | 166 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDFSCFQEYP FEFHCRGTTF NGFRENNAVS ETVEEFCNKR RMQKKSDDLK TKKKKKQSVS 60 RVCSRGHWRI SEDTQLMELV SVYGPQNWNH IAESMQGRTG KSCRLRWFNQ LDPRINKRAF 120 SDEEEERLLA AHRAFGNKWA MIAKLFNGRT DNALKNHWHV LMARKMRQQS SSYVQRFNGS 180 AHESNTDHKI FNLSPGLSLL TLHICIEFNS VIVMRYFRYL SLRNNELMVW SQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-31 | 65 | 166 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 52 | KRRMQKKSDDLKTKK |
2 | 38 | 55 | KRRMQKKSDDLKTKKKKK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258004_at | 0.0 | ||||
Expression Atlas | AT3G29020 | - | ||||
AtGenExpress | AT3G29020 | - | ||||
ATTED-II | AT3G29020 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a putative transcription factor (MYB110). | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G29020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G29020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF272732 | 0.0 | AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_566841.1 | 1e-176 | myb domain protein 110 | ||||
Swissprot | Q9SEZ4 | 2e-63 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | Q9FYX6 | 1e-175 | Q9FYX6_ARATH; Myb domain protein 110 | ||||
STRING | AT3G29020.2 | 1e-147 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT3G29020.1 |
Entrez Gene | 822542 |
iHOP | AT3G29020 |
wikigenes | AT3G29020 |
Publications ? help Back to Top | |||
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