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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi06g10990.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
GRAS |
| Protein Properties |
Length: 474aa MW: 52149.7 Da PI: 6.2588 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi06g10990.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 340.6 | 2.8e-104 | 99 | 470 | 1 | 374 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
lv+lL+++Aea++ ++++la+ +L rl+el ++ +g++++Rlaa+f AL++ l + + ++++++ + n +++l+a++l++++sP++
Vradi06g10990.1 99 LVHLLMAAAEALTPgtESHHLARVILVRLNELvSTTHGTNIERLAAHFSSALQNLLDG--AGSAHSITTDTP---NPTDTLTAFHLLQDMSPYV 187
68**********97336777************666788*******************9..444444444444...58999************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
kf+h+taNqaIleav++e+rvHi+Dfd+++G+QW++L+q+L+sR+ gpp +lRiT++++ +++ s +++etg+rL+ fA+++g pf+f+
Vradi06g10990.1 188 KFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPPgpHLRITALSRGSTSgrrSIATIQETGRRLTAFAASVGQPFSFHQ 281
*********************************************887667*********8888899999************************ PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdslea 273
+ e++++++L++ +gEal+ n++l+l +l + ++Lk k+l+P+vv vve+e+ + +++ F+ f+++l++ysa+fdsle+
Vradi06g10990.1 282 CRLDPEETFRPSSLKLIRGEALVFNCMLHLPHLS---FRASGSVASFLKGAKELNPRVVMVVEEEVARgGDAGFVGLFMDSLQHYSAVFDSLEV 372
9999**************************9986...333333456*******************99999************************ PP
GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrp 366
++p ++ +++ vEr++lg++i n v+ ++ e ++W+e+l++aGF+ vp+s + +qa+lll ++ dgyrvee ++ lvlgWk+r+
Vradi06g10990.1 373 GFPMQKWAQALVERVFLGPRIANSVSLMYRS---GGEDRGSWEEWLGAAGFRGVPVSFANHCQANLLLGLFN-DGYRVEEMgNNKLVLGWKSRR 462
****************************999...778889********************************.******88699999******* PP
GRAS 367 LvsvSaWr 374
L+s+S+W+
Vradi06g10990.1 463 LISASVWT 470
*******6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 474 aa
Download sequence Send
to blast |
MADRHTRDQS NTWMVERQVL ENEKLVREFR SITTSSSSEE DWTNLWSPLI DWGSLAAGED 60
NFQILIDSIA HEHDVVLTPD QTTAQDPDLS SHDEKGLRLV HLLMAAAEAL TPGTESHHLA 120
RVILVRLNEL VSTTHGTNIE RLAAHFSSAL QNLLDGAGSA HSITTDTPNP TDTLTAFHLL 180
QDMSPYVKFA HFTANQAILE AVAHEKRVHI VDFDVTEGAQ WASLMQSLSS RSTGPPGPHL 240
RITALSRGST SGRRSIATIQ ETGRRLTAFA ASVGQPFSFH QCRLDPEETF RPSSLKLIRG 300
EALVFNCMLH LPHLSFRASG SVASFLKGAK ELNPRVVMVV EEEVARGGDA GFVGLFMDSL 360
QHYSAVFDSL EVGFPMQKWA QALVERVFLG PRIANSVSLM YRSGGEDRGS WEEWLGAAGF 420
RGVPVSFANH CQANLLLGLF NDGYRVEEMG NNKLVLGWKS RRLISASVWT SNS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
