PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g09110.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 236aa    MW: 25901.8 Da    PI: 6.1445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g09110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.1e-194494155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Vradi06g09110.1 44 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 94
                     68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-134494IPR001471AP2/ERF domain
PROSITE profilePS5103223.4245102IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2245103IPR016177DNA-binding domain
SMARTSM003801.8E-3645108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-3245103IPR001471AP2/ERF domain
CDDcd000181.09E-3046104No hitNo description
PRINTSPR003672.4E-104657IPR001471AP2/ERF domain
PRINTSPR003672.4E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MRVSARNDNS GKESRSTSPL SPSEAAPPSE SKPEKRNRDS NKHPVYRGVR MRNWGKWVSE  60
IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGNSAILN FPELAASLPR PVSLAPRDVQ  120
AAAAKAAHTD FRPSSTSLSS SLVSTTSSWS SLSSTVSTAD LSAESEELSQ IIELPRLETS  180
YELGKEFVFA DSQDTWMYQP PMPWLQTTYD ASHADDDVVE AETGLVTGFK SFLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-19421021172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g09110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503815.11e-170ethylene-responsive transcription factor TINY
RefseqXP_022637893.11e-170ethylene-responsive transcription factor TINY
SwissprotQ9LYD34e-69DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3UCQ61e-169A0A1S3UCQ6_VIGRR; ethylene-responsive transcription factor TINY
STRINGXP_007161494.11e-127(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-68ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]