PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g06910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 16077.5 Da PI: 4.9536 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.7 | 4.4e-16 | 85 | 133 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 ++y+GVr ++ +gr+v+eIrdp + +++++l++f++ eeAa+a++ ++ l Vradi06g06910.1 85 PQYQGVRKRP-WGRFVVEIRDPLK---KAKVWLETFDSVEEAARAYDTIAQTL 133 68********.**********743...5*******************998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-11 | 85 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.20E-19 | 85 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.5E-21 | 86 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-10 | 86 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-13 | 86 | 134 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.726 | 86 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-8 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-8 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MDLPDPYGED VTMEDFCCTS AISTSSAYGE DVTVLNYLFW KIGCNEIGAW VLNSMFVCKS 60 IFERLDASVV TVAAAAANKS LLKEPQYQGV RKRPWGRFVV EIRDPLKKAK VWLETFDSVE 120 EAARAYDTIA QTLRCQRRWM F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-15 | 86 | 136 | 14 | 65 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g06910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 4e-56 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014503086.1 | 1e-102 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 1e-22 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A1S3UAP0 | 1e-101 | A0A1S3UAP0_VIGRR; ethylene-responsive transcription factor 3-like | ||||
STRING | GLYMA18G10290.1 | 3e-24 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 9e-24 | ethylene response factor 7 |
Publications ? help Back to Top | |||
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