PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g06550.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 261aa MW: 28336.5 Da PI: 9.1438

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g06550.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.3	2e-41	59	158	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l+ael Vradi06g06550.1 59 PCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAEL 152 7********************************************************************************************* PP DUF260 95 allkee 100 +++++e Vradi06g06550.1 153 NAIRAE 158 *99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.35	58	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-41	59	156	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MRTIFSLQIH GFNMQFLYFP KDRLEEITKV RAEVEASSQM GRKHFYGPTP GITLNTVTPC 60 AACKLLRRRC AEECPFSPYF SPHEPQKFVA VHKVFGASNV SKMLLEVPEG QRADAANSLV 120 YEANLRLRDP VYGCMGAISA LQQQVQSLQA ELNAIRAEIL KYKYREAASL ISSNHAALVS 180 SADAISAAIP TNSQPQGLSQ PLTPPPPPKP LHTPPLKPLP SPSVILSSFS SSSTSSVYTP 240 PKSSMSLGSI SSTENVPYFV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	49	170	5	122	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	49	170	5	122	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g06550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014504141.1	1e-173	LOB domain-containing protein 13 isoform X1
Swissprot	Q9AT61	1e-72	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0S3RLB5	1e-176	A0A0S3RLB5_PHAAN; Uncharacterized protein
STRING	XP_007142059.1	1e-134	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-67	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]