PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g06330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 20283.6 Da PI: 4.6596 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.7 | 4.4e-21 | 25 | 75 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp+ r kr +lg+f+taeeAa +++a+ kl+g Vradi06g06330.1 25 TKFRGVRQRP-WGRWAAEIRDPT----RrKRLWLGTFDTAEEAATEYDKAAVKLKG 75 69********.**********84....34************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 4.6E-66 | 5 | 182 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Pfam | PF00847 | 9.6E-14 | 25 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.77E-32 | 25 | 83 | No hit | No description |
PROSITE profile | PS51032 | 24.316 | 26 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-22 | 26 | 84 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-31 | 26 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-37 | 26 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MLTARQCPEI SAQTNAAEVS ARRRTKFRGV RQRPWGRWAA EIRDPTRRKR LWLGTFDTAE 60 EAATEYDKAA VKLKGPNAVT NFPLTTPPPV AESPFAAIDS LSTDGGASYS DLVASPTSVL 120 TYDCDSTPFD SFHYGDVDAL GFHIDAPLRL ADVGVSLTCH PYKEEQEAFD EFDLDEFMKW 180 PY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 27 | 84 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-20 | 27 | 84 | 6 | 64 | ATERF1 |
3gcc_A | 4e-20 | 27 | 84 | 6 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g06330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014502824.1 | 1e-118 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 2e-46 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A1S3UA29 | 1e-117 | A0A1S3UA29_VIGRR; pathogenesis-related genes transcriptional activator PTI6-like | ||||
STRING | XP_007142025.1 | 5e-93 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-34 | cytokinin response factor 4 |