PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g05890.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 441aa    MW: 48999.3 Da    PI: 8.2204
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g05890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-1680124147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  Vradi06g05890.1  80 RERWTDEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 124
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1774128IPR009057Homeodomain-like
PROSITE profilePS5129420.88575129IPR017930Myb domain
TIGRFAMsTIGR015571.1E-1678127IPR006447Myb domain, plants
SMARTSM007174.7E-1379127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-980120IPR009057Homeodomain-like
PfamPF002491.3E-1380123IPR001005SANT/Myb domain
CDDcd001675.66E-1082125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAIQVVLVCF VDCSGFPAKS LFIWGKSAFT RSRGGPPIGD EICLSPGVHS VADIPLHDQF  60
SFGNDYALKV RKPYTITKQR ERWTDEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH  120
AQKFFSKIVR ESSGNSTTLE ESIEIPPPRP KRKPIHPYPR KLIEIPKKEI SNSEHPLRSN  180
SLKSSDFGQE NNSPKSVLST VVSENLGSSD SDTPTGSLSP VSSISGVLTN RFPLAQPKTS  240
FEEEGSLPSS PHDEQHLVKL KLFHRETVST KDDAAEESCG RTLKLFGTTL LVTDTSKPFS  300
LITEPFKPIP AAATYLMQLQ NGCSDLAEGP IVPRWSFSHN ALSETLQKEL KGKHLYSNLG  360
DFEHKEVQKE GSWSGSNSSS VNDGENTAAS ETSGIFELRV RAKTCGKGFV PYKRCMAERE  420
NKYSSVCDEE REEQRVKLSL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g05890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311810.0KT031181.1 Glycine max clone HN_CCL_152 MYB/HD-like transcription factor (Glyma02g40800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502591.10.0protein REVEILLE 1
TrEMBLA0A1S3U9970.0A0A1S3U997_VIGRR; protein REVEILLE 1
STRINGXP_007141962.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.14e-53MYB_related family protein