PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g05550.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 223aa MW: 25446.8 Da PI: 5.1474

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g05550.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.2e-15	14	84	1	47
TSSS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd++l+ + G W++Ia++++ gRt++++k++w+++ Vradi06g05550.1 14 KGPWTAEEDKKLISFILTNGQYcwravpklavarksfflssdlrvdlIWSKIASHLP-GRTDNEIKNHWNTH 84 79****************77*******************************.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.409	9	89	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-18	13	74	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-14	13	87	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.68E-14	14	86	IPR009057	Homeodomain-like
CDD	cd00167	5.93E-10	16	85	No hit	No description
Pfam	PF00249	1.7E-7	62	84	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-7	75	114	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MGRQPCCDKV GLKKGPWTAE EDKKLISFIL TNGQYCWRAV PKLAVARKSF FLSSDLRVDL 60 IWSKIASHLP GRTDNEIKNH WNTHIKKKLK KMGIDPITHK PLPNANQQIQ NHPQPEQQQL 120 HQPPEEEQNY QQPLQVDFNT KVDPNKELEI SVESSNGSEA KEEEQIIATS QFETMDQLMN 180 GFCTDEVPII EPNEILMPYD DCDGPLTQFS RTVTDSWAFG LF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269\|PubMed:23660402}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g05550.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269\|PubMed:23660402}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014503716.1	1e-126	myb-related protein 308
Swissprot	Q9C7U7	8e-52	MYB20_ARATH; Transcription factor MYB20
TrEMBL	A0A1S3UCH4	1e-124	A0A1S3UCH4_VIGRR; myb-related protein 308
STRING	GLYMA02G41180.1	1e-88	(Glycine max)
STRING	GLYMA14G39530.1	1e-88	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF653	34	142

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	6e-52	myb domain protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]