PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g05480.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 510aa    MW: 56133.8 Da    PI: 5.1927
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g05480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4319.3e-1321244871374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv++L++cAea++ g+++la++l+++  +la+++g +m ++a++f++ALa+r+++        + p et +++ s+ l+    f+e sP+lkf+
  Vradi06g05480.1 124 LVHALMACAEAIQLGNASLASSLVKHAGTLAASQGGSMGKVASFFAQALARRIYG--------FYPYETLDSSYSDMLHT--HFYESSPYLKFA 207
                      689****************************************************........55555554455666555..6*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      h+taN+aIlea++++++vH+iDf+++qGlQWpa++qaLa Rp+gpp +R+ g+g+p+ +  ++++l+++g +La++A++++++fef+ +v+++l
  Vradi06g05480.1 208 HFTANHAILEAFATADTVHVIDFGLKQGLQWPAFMQALAVRPGGPPAFRLSGIGPPRLDdpDSDSLSQVGLKLAELARKIRIQFEFRGFVCNSL 301
                      ********************************************************99999********************************* PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +dl+++ L+++ gE +aVn++++lhrll+++v++e+    vL +vk+++P++v+vveqea+hn++ Flerf+eal+yys+lfds+e ++++ +e
  Vradi06g05480.1 302 ADLDPSVLDIRAGEFVAVNSIFELHRLLARPVDMEK----VLATVKRIKPEIVTVVEQEANHNGPVFLERFTEALYYYSSLFDSMEGSVAAPNE 391
                      ************************************....****************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSa 372
                      ++ ++ +++lgr+i+nvvaceg+er+erhetl++Wr+rl+  G++pv+++++a  qa++ll  ++  ++gyrvee++g+l+lgW++rpLv+ Sa
  Vradi06g05480.1 392 QALVMAEMYLGRQICNVVACEGEERVERHETLGQWRARLGLGGLEPVRMGSNAFRQARMLLGLYAegGEGYRVEENNGCLLLGWHTRPLVASSA 485
                      ****************************************************************977899************************ PP

             GRAS 373 Wr 374
                      Wr
  Vradi06g05480.1 486 WR 487
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.9E-9156No hitNo description
PfamPF120411.3E-16145IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098564.11198465IPR005202Transcription factor GRAS
PfamPF035143.2E-129124487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MVDVAHKLDQ LEMVMEEDGI SHLASNTVHY DPTDLYGWVQ NILNNAPNHT ITTNSNNAVI  60
PSPLITVPEN DLTAIPLPYI EAYPQTENQN CHKRFKGSSS PLWPAISSDN VLPVVLVEEA  120
GVYLVHALMA CAEAIQLGNA SLASSLVKHA GTLAASQGGS MGKVASFFAQ ALARRIYGFY  180
PYETLDSSYS DMLHTHFYES SPYLKFAHFT ANHAILEAFA TADTVHVIDF GLKQGLQWPA  240
FMQALAVRPG GPPAFRLSGI GPPRLDDPDS DSLSQVGLKL AELARKIRIQ FEFRGFVCNS  300
LADLDPSVLD IRAGEFVAVN SIFELHRLLA RPVDMEKVLA TVKRIKPEIV TVVEQEANHN  360
GPVFLERFTE ALYYYSSLFD SMEGSVAAPN EQALVMAEMY LGRQICNVVA CEGEERVERH  420
ETLGQWRARL GLGGLEPVRM GSNAFRQARM LLGLYAEGGE GYRVEENNGC LLLGWHTRPL  480
VASSAWRLAP NGLNPVRDQN DMNQDSRFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6311848613378Protein SCARECROW
5b3h_A2e-6311848612377Protein SCARECROW
5b3h_D2e-6311848612377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g05480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502549.10.0DELLA protein GAI
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1S3U9950.0A0A1S3U995_VIGRR; DELLA protein GAI
STRINGXP_007141902.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1