PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g03240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | EIL | ||||||||
Protein Properties | Length: 723aa MW: 80808.4 Da PI: 5.1928 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 291.1 | 4.1e-89 | 292 | 538 | 137 | 353 |
TTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTT CS EIN3 137 selqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerq 230 +elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPtG+e ww++ gl+kdqg+ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rq Vradi06g03240.1 292 KELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGNEVWWPQIGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQ 385 69******************************************************************************************** PP SSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX................... CS EIN3 231 skylqdkmsakesfallsvlnqeekecatvsah..ss.slrkqspkvtlsceqkedvegkkeskikhvqavktta................... 302 sk+lqdkm+akes+++l+++nqee+++++++++ ++ s+ ++ ++++++ +++dv+g +e+ +v+ +k Vradi06g03240.1 386 SKCLQDKMTAKESATWLAIINQEEALARELYPDycPPfSSGAGNGSMVINDCSEYDVDGAEEEPNFDVEDRKPDPlhpsnlgmeritgrlplqi 479 *********************************8644677779***************88888879999999877******************* PP ..........XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 303 ..........gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 +++++rkrk + + + ++ k ++tc++ q++++e++l+f+d++++++++ Vradi06g03240.1 480 shpfkgdvvtNLDFIRKRKIPGDFNLMMDPK--IYTCEHPQCPYNEPRLGFPDRSARDNHQ 538 *******************766666666666..6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.450.60 | 6.5E-32 | 212 | 292 | No hit | No description |
Pfam | PF01217 | 4.0E-30 | 213 | 292 | IPR022775 | AP complex, mu/sigma subunit |
SuperFamily | SSF64356 | 1.65E-22 | 213 | 292 | IPR011012 | Longin-like domain |
PROSITE pattern | PS00989 | 0 | 240 | 250 | IPR000804 | Clathrin adaptor complex, small chain |
Pfam | PF04873 | 1.0E-66 | 291 | 409 | No hit | No description |
SuperFamily | SSF116768 | 8.5E-61 | 292 | 412 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene3D | G3DSA:1.10.3180.10 | 4.5E-73 | 293 | 419 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006886 | Biological Process | intracellular protein transport | ||||
GO:0016192 | Biological Process | vesicle-mediated transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0030117 | Cellular Component | membrane coat | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence Send to blast |
MHTQISPSLS LLRIAVSTGA ATPPFGQSRV IVGCAACDGS VTAACGRPTF GFASSLPSET 60 EPNKGCIETF CSCGWEDSAI RGEEIGDVRS ETMASDGKKS DDMDSLFDGM VLFNPAADIE 120 IGVEAEILQV TRKCFVIKEM KRGASFRGDA LGDAVILEFL HYKFRDLTVS TRKSKTHKMV 180 FTILSKGEIQ GRSPNQPSKS DGWLDNVISL GSSIIRELCG LIISRAPKLC NFVEWKGFKV 240 VYKRYASLYF CICNDEEDNE LETLAIIHHF VETLDRYFGS VCELDLIFNF HKELQDTTLG 300 SLLSALMQHC DPPQRRFPLE KGVPPPWWPT GNEVWWPQIG LPKDQGPPPY KKPHDLKKAW 360 KVGVLTAVIK HMSPDIAKIR KLVRQSKCLQ DKMTAKESAT WLAIINQEEA LARELYPDYC 420 PPFSSGAGNG SMVINDCSEY DVDGAEEEPN FDVEDRKPDP LHPSNLGMER ITGRLPLQIS 480 HPFKGDVVTN LDFIRKRKIP GDFNLMMDPK IYTCEHPQCP YNEPRLGFPD RSARDNHQLN 540 CPYRNSSSDY GGGSNFHDSE VKPVIFPQSF VQPNTTSQAA NVVQPSFAVS GLGVPEDGQK 600 MINDLMTIYD TNIIGNNNLS SNNFVAAENQ NFSQTMLQQQ QQDSRRDNYF TGQGMMTEGN 660 FFAREEGQFE RFKAMNMNAP FDTNHMLFSP QCDLSSFDFK DIQGGGMDTG HRQQQEVSIW 720 FE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 2e-81 | 292 | 418 | 7 | 133 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 2e-81 | 292 | 418 | 7 | 133 | Protein ETHYLENE INSENSITIVE 3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g03240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF467784 | 0.0 | AF467784.1 Vigna radiata transcription factor EIL1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304225.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Refseq | XP_014504860.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein isoform X1 | ||||
Swissprot | O24606 | 1e-136 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A1S3UFP9 | 0.0 | A0A1S3UFP9_VIGRR; ETHYLENE INSENSITIVE 3-like 1 protein | ||||
TrEMBL | Q8SA69 | 0.0 | Q8SA69_VIGRA; Transcription factor EIL1 | ||||
STRING | XP_007141570.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF322 | 34 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 1e-135 | EIL family protein |