PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g02390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 33327.6 Da PI: 8.1333 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.7 | 5.9e-50 | 21 | 147 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv +yL++kve+k+l++ e ik++diyk++PwdLp + + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk++++ Vradi06g02390.1 21 LPGFRFHPTDEELVGFYLRRKVEKKPLRI-ELIKQIDIYKYDPWDLP-TSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCV 112 69***************************.89***************.445689**************************************97 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl Vradi06g02390.1 113 kePHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 147 445566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-54 | 19 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.463 | 20 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-25 | 22 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MDVPKLHNSD EEDKKEDEVV LPGFRFHPTD EELVGFYLRR KVEKKPLRIE LIKQIDIYKY 60 DPWDLPTSSV GEKEWYFFCI RGRKYRNSIR PNRVTGSGFW KATGIDKPIY CVKEPHECIG 120 LKKSLVYYRG SAGKGTKTDW MMHEFRLPPN GKSTTNDIQE AEVWTLCRIF KRVPSYKRYT 180 PNLKDSNTAP ITKPNPTNSS SSKTCSLESE TFTNSPSSLL LHQNQIIKPV FGHVDQHPPT 240 SFSYSTFWNH QNLELAHDEN WDDLTSVVQF AVDPSRLSDH CKEFNAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-48 | 22 | 178 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-48 | 22 | 178 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-48 | 22 | 178 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-48 | 22 | 178 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-48 | 22 | 178 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-48 | 22 | 178 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-48 | 22 | 178 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-48 | 22 | 178 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-48 | 22 | 178 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-48 | 22 | 178 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-48 | 22 | 178 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-48 | 22 | 178 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-48 | 22 | 178 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-48 | 22 | 178 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g02390.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095530 | 1e-148 | BT095530.1 Soybean clone JCVI-FLGm-15A17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022637360.1 | 0.0 | transcription factor JUNGBRUNNEN 1 isoform X2 | ||||
Swissprot | Q9SK55 | 5e-93 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A3Q0EZZ1 | 0.0 | A0A3Q0EZZ1_VIGRR; transcription factor JUNGBRUNNEN 1 isoform X2 | ||||
STRING | XP_007141427.1 | 1e-176 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-88 | NAC domain containing protein 42 |