PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g23450.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 281aa    MW: 30785.7 Da    PI: 9.5265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g23450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-202575256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa+++++g+
  Vradi05g23450.1 25 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAAREFRGA 75
                     59*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-222583IPR016177DNA-binding domain
PfamPF008472.3E-142574IPR001471AP2/ERF domain
PROSITE profilePS5103224.5132582IPR001471AP2/ERF domain
SMARTSM003803.4E-372588IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-322583IPR001471AP2/ERF domain
CDDcd000183.82E-172584No hitNo description
PRINTSPR003671.5E-112637IPR001471AP2/ERF domain
PRINTSPR003671.5E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAPRDRTTAL AGPGPSPTQA HKEIRYRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAEE  60
AARAYDAAAR EFRGAKAKTN FPTASELLVN NHSSSNNNSA RSPSQSSTLD SSSPPPPPPL  120
LDLTLTPLTA SVLPAARPVL FFDAFARADT VIAVGRRDTC GFGRPATDFR RSDSNSERRA  180
LLDLDLNVAP LPEVDGGWWR MKKLHNDVVQ MCEELAIRFH NACGGAFGTV AQPVCDMFAK  240
GWRGEGWVRY RRFYGSPAVA CGTREAVVDV LVVEAAQDWW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1925821472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g23450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499747.11e-136ethylene-responsive transcription factor 4
TrEMBLA0A1S3U1641e-134A0A1S3U164_VIGRR; ethylene-responsive transcription factor 4
STRINGXP_007149489.12e-81(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-25ethylene responsive element binding factor 4