PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g17220.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 150aa    MW: 16780.1 Da    PI: 10.6112
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g17220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.46.8e-122593165
         trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkik 65
                     +W++  v +L+ea++ ++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kr ++++
  Vradi05g17220.1 25 EWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVssraNSTKSPKTQTQCKNKIESMKKRSEQTR 93
                     5*************************************88777778889999**********9866655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-132395No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MSGGGKPSSE RKAIGGGSDR LKRDEWSEGA VSTLLEAYEA KWVLRNRAKL KGHDWEDVAK  60
HVSSRANSTK SPKTQTQCKN KIESMKKRSE QTRMETMKEI EKMRVEAEAK RGEMELKRTE  120
IIANTQLEIA RIFASVNKGV DSSLRIGRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g17220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-127AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148925.14e-49hypothetical protein PHAVU_005G025700g
RefseqXP_017423867.14e-49PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_017423868.14e-49PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0L9UIB21e-47A0A0L9UIB2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SKL01e-47A0A0S3SKL0_PHAAN; Uncharacterized protein
TrEMBLV7BSI09e-48V7BSI0_PHAVU; Uncharacterized protein
STRINGXP_007148925.11e-48(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.16e-43sequence-specific DNA binding transcription factors