PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g16960.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 723aa    MW: 77939.4 Da    PI: 6.169
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g16960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07302322526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C++Gd C +aHg
  Vradi05g16960.1 302 PCPEFRK-GACRRGDMCEYAHG 322
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.35E-1730163IPR020683Ankyrin repeat-containing domain
CDDcd002046.21E-1536162No hitNo description
Gene3DG3DSA:1.25.40.201.0E-1667163IPR020683Ankyrin repeat-containing domain
PfamPF127968.7E-1079151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.22884192IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0484114IPR002110Ankyrin repeat
PROSITE profilePS5008812.396119154IPR002110Ankyrin repeat
SMARTSM002481.2E-4119151IPR002110Ankyrin repeat
SMARTSM003569.5E-6297323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981302324IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4302322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4330360IPR000571Zinc finger, CCCH-type
SMARTSM0035647332355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MCRGPEKSKS LSTPSSSAVE GSTRAEDMKD LTVCAEDSFS CLLELASNND FEDFKLALDS  60
DISLINKVGL WYVRQIGSKQ IVLEHRTPLM VASMYGSVDV LKLILSCPEV DVNFSCGTDR  120
STALHCAASS GSLNAVDVVK LLLSSGADIR CVDANGNRPV DVIVVPPKLK GLKASLEDLL  180
SDSGCDGSVG DCFIPLAVNS PCSDSATHFL SPENGLPSSP MASKFTDTTV NSASEKKEYP  240
TDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPEFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GVSCNRRVCF FAHTAEELRP  360
LYVSTGSAVP SPRSSASTPN VMDMAAAMSL FPGSPSSLSG MSPSPFAQQM SPSTGGIPHS  420
SSAWPQPNVP ALHLPGSNIQ TSRLRSSLNA RDMPPEDLDV LQDFDGQQHL LNDLSCFSQP  480
RPGAISVSRS GRSKTLTPSN LDDLFSAEIS SPRYSDPAAA CVFSPTHKSA VFNQFQQLQS  540
SLSPINTSVS SPRNVEHTLL QASFGVSSPG RMSPRSLEPI SPMSARLSAL AQRDKQQLRS  600
LSSRDLGAHN PVSIVGSPGN SWSNWGSPHG NGKVDWSVNG NELGRLQRSS SFELGNNGEE  660
PDLSWVQSLV KESPSEIKEK LAGSGGPVVS ADGQNSNPQV ESIDHSVLGA WLEQMQLDQL  720
VV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g16960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014501476.10.0zinc finger CCCH domain-containing protein 30-like isoform X1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3U6530.0A0A1S3U653_VIGRR; zinc finger CCCH domain-containing protein 30-like isoform X1
STRINGGLYMA15G43030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]