PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g15570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 220aa MW: 24175 Da PI: 7.678 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.8 | 4.4e-12 | 14 | 53 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c Vradi05g15570.1 14 KGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSC 53 79******************************99*****9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-21 | 5 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.95E-14 | 9 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.753 | 9 | 77 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-13 | 13 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-13 | 14 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-12 | 16 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDDRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCPGRLPGR 60 TDNEIKNYWN THIRRKLLSR GIDPATHRPL NDSPRHNQVQ ESAGAATITF APKQEENDNN 120 VLLEVKDSKS PTSERCPDLN LELSISPPHH EREEGGDEEE SKSIGRSLCF ACSLGLQNSK 180 DCSCALNAIT ANANASTATG YDFLGLKTNP LDYRTLQMK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g15570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014499816.1 | 1e-144 | myb-related protein 308 | ||||
Swissprot | P81393 | 2e-76 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A1S3U1C6 | 1e-143 | A0A1S3U1C6_VIGRR; myb-related protein 308 | ||||
STRING | XP_007137351.1 | 1e-122 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-66 | myb domain protein 4 |
Publications ? help Back to Top | |||
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